genome.fa.s399.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold399
Parameters: 2 7 7 80 10 50 1000
Length:  184626

Tables:   1   2   

This is table  1  of  2  ( 138 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1950--2056	53	2.0	53	98	0	205	30	19	22	27	1.98
4561--4629	33	2.1	33	100	0	138	34	14	27	23	1.94
5360--5398	17	2.4	16	87	12	53	28	5	0	66	1.12
6083--6108	2	13.0	2	100	0	52	50	0	0	50	1.00
9756--9789	17	2.0	17	94	0	59	88	2	8	0	0.62
10083--10114	16	1.9	17	93	6	57	46	0	0	53	1.00
10083--10165	17	4.8	17	73	15	64	44	0	0	55	0.99
10121--10170	16	3.3	16	71	23	54	40	0	0	60	0.97
10215--10255	20	2.0	20	90	9	66	63	0	0	36	0.95
14096--14139	2	22.0	2	95	0	79	50	2	0	47	1.13
14746--14774	2	14.5	2	100	0	58	48	0	0	51	1.00
15418--15455	15	2.4	16	82	8	51	52	0	0	47	1.00
15434--15529	31	3.3	28	74	11	86	57	2	1	39	1.17
15438--15513	29	2.5	30	75	12	75	59	1	0	39	1.06
17740--17771	2	16.0	2	100	0	64	50	0	0	50	1.00
18707--18748	22	1.9	22	85	9	59	42	0	2	54	1.13
18955--18992	20	1.9	20	84	10	51	26	2	5	65	1.27
19156--19208	14	3.7	13	75	20	52	52	3	1	41	1.30
19765--19815	21	2.3	21	81	15	59	54	1	0	43	1.11
26458--26520	25	2.6	24	76	16	76	49	0	0	50	1.00
29776--29819	21	2.1	21	82	0	52	38	0	20	40	1.53
29782--29826	21	2.1	21	83	0	54	40	2	15	42	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33174--33217	21	2.1	21	82	0	52	36	4	20	38	1.73
34527--34560	17	2.0	17	88	0	50	17	0	8	73	1.08
36048--36086	2	19.5	2	94	0	69	48	2	0	48	1.15
36442--36496	18	2.9	19	77	15	60	60	0	0	40	0.97
36611--36637	2	13.5	2	100	0	54	48	0	0	51	1.00
37228--37303	39	1.9	39	82	10	93	48	1	1	48	1.18
37432--37483	23	2.2	25	82	6	63	34	0	1	63	1.06
38627--38681	11	4.8	12	74	14	53	61	0	0	38	0.96
38710--38741	13	2.3	15	84	15	50	46	0	0	53	1.00
40819--40866	24	2.0	24	84	4	62	54	0	0	45	0.99
41430--41472	14	2.9	15	83	16	54	37	0	0	62	0.95
42817--42843	13	2.1	13	100	0	54	25	14	29	29	1.95
43039--43092	5	11.0	5	74	18	51	7	16	0	75	1.01
43037--43092	20	2.8	21	89	7	82	8	16	0	75	1.05
43546--43587	3	14.0	3	100	0	84	33	0	0	66	0.92
44496--44544	21	2.4	21	80	16	66	30	2	0	67	1.02
44553--44577	12	2.1	12	100	0	50	40	16	0	44	1.47
45985--46024	3	13.3	3	100	0	80	65	0	0	35	0.93
46151--46209	15	3.9	15	75	4	55	54	1	3	40	1.27
46246--46313	14	4.6	14	75	18	50	57	0	1	41	1.08
47083--47133	22	2.3	22	89	3	75	60	0	0	39	0.97
47315--47369	25	2.1	24	83	12	65	45	1	1	50	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48142--48247	29	3.7	29	79	12	103	39	2	1	55	1.25
48142--48261	29	4.1	28	75	18	88	39	2	1	56	1.23
48777--48850	29	2.5	30	86	8	107	44	0	0	55	0.99
48773--48904	25	4.9	27	76	15	87	46	0	0	53	1.00
48840--48886	13	3.7	13	75	13	53	46	0	0	53	1.00
48808--48938	26	5.1	26	74	16	105	50	0	0	48	1.06
48910--48959	18	2.9	18	77	17	61	54	6	0	40	1.25
49040--49099	32	1.9	32	83	10	79	35	6	1	56	1.35
49030--49090	18	3.2	19	76	17	63	32	3	1	62	1.21
49049--49114	32	2.2	29	80	15	73	36	6	0	57	1.23
49132--49212	15	5.9	14	72	23	66	37	0	2	60	1.10
49133--49188	24	2.3	25	84	12	80	37	0	0	62	0.95
50559--50601	21	2.0	21	91	8	70	41	0	0	58	0.98
51471--51530	30	2.0	30	83	0	75	46	1	10	41	1.47
51526--51649	52	2.3	54	81	13	141	41	2	2	53	1.27
52194--52253	14	4.4	14	78	4	77	61	0	0	38	0.96
60551--60667	4	29.2	4	89	0	135	0	40	9	50	1.35
70099--70143	23	2.0	23	86	0	63	46	0	2	51	1.13
73249--73289	2	20.5	2	94	0	73	51	46	0	2	1.14
73505--73533	2	15.0	2	92	7	51	51	0	0	48	1.00
73977--74011	17	2.0	18	88	5	54	71	0	0	28	0.86
73974--74012	9	4.3	9	87	9	53	69	0	0	30	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74227--74266	16	2.5	17	80	15	50	70	2	2	25	1.13
74356--74392	2	18.5	2	100	0	74	48	0	0	51	1.00
75195--75236	21	2.0	21	86	9	59	50	0	0	50	1.00
75778--75814	2	19.5	2	89	10	60	45	0	0	54	1.00
76092--76152	5	12.2	5	78	13	54	67	0	0	32	0.91
76094--76161	8	8.4	8	71	19	52	69	0	0	30	0.89
76094--76173	10	8.0	10	72	22	62	68	1	0	30	0.97
76094--76159	15	4.0	16	84	11	89	69	0	0	30	0.88
76092--76158	17	4.1	17	83	16	88	68	0	0	31	0.90
77937--77968	2	16.0	2	93	0	55	50	0	3	46	1.17
79174--79215	22	2.0	21	85	4	57	47	11	2	38	1.53
79225--79258	16	2.2	15	89	5	50	55	2	0	41	1.15
81180--81222	20	2.2	20	95	0	77	34	6	25	32	1.83
84419--84443	8	3.1	8	100	0	50	64	0	0	36	0.94
84441--84500	11	5.2	12	77	18	65	38	0	0	61	0.96
84439--84522	29	2.9	30	84	12	95	41	0	0	58	0.98
87892--87955	23	2.8	24	79	11	64	59	1	1	37	1.16
87875--87955	22	3.6	23	75	11	69	59	1	2	37	1.19
90397--90426	13	2.2	14	94	5	53	40	10	0	50	1.36
91819--91848	2	15.0	2	100	0	60	50	0	0	50	1.00
92005--92053	3	16.3	3	100	0	98	32	0	0	67	0.91
92693--92736	21	2.2	20	83	4	52	54	0	4	40	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95822--95881	31	1.9	31	100	0	120	41	0	5	53	1.23
99287--99347	28	2.1	30	82	8	74	34	0	1	63	1.04
99767--99860	18	4.8	20	67	21	56	58	0	0	41	0.98
99767--99858	5	19.2	5	69	16	61	58	0	0	41	0.98
100213--100265	15	3.4	16	78	19	58	33	0	7	58	1.26
104376--104433	27	2.1	28	81	9	66	53	3	5	37	1.40
106045--106079	17	2.1	17	94	0	61	54	0	2	42	1.15
115685--115737	21	2.5	21	82	17	65	39	0	0	60	0.97
121695--121747	12	4.5	12	79	11	56	64	0	1	33	1.05
121724--121764	17	2.4	17	83	0	55	68	0	2	29	1.03
121698--121776	36	2.2	36	80	8	90	64	0	1	34	1.02
121854--121893	19	2.0	22	85	14	59	72	7	0	20	1.08
121937--121999	21	2.9	21	78	4	63	41	3	6	49	1.44
124604--124660	19	2.9	19	81	2	60	33	0	1	64	1.04
125987--126046	29	2.1	29	84	12	79	71	0	0	28	0.86
126079--126134	15	3.6	15	85	11	69	64	0	0	35	0.94
128628--128666	14	2.5	15	84	15	53	43	2	0	53	1.14
130829--130885	30	1.9	30	82	3	71	26	26	7	40	1.81
131249--131286	18	2.2	17	86	13	51	68	0	5	26	1.11
132404--132430	4	6.8	4	100	0	54	48	0	0	51	1.00
133181--133224	2	22.0	2	100	0	88	50	0	0	50	1.00
134715--134753	19	2.1	19	85	0	51	23	30	25	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
136571--136597	14	1.9	14	100	0	54	18	0	0	81	0.69
137705--137768	20	3.2	20	90	0	110	25	25	10	39	1.88
138520--139208	42	16.4	42	88	1	925	36	20	32	9	1.86
139189--139225	17	2.2	17	90	0	56	40	29	29	0	1.57
139186--139316	42	3.1	41	85	5	111	38	22	32	6	1.79
139147--139267	59	2.1	59	95	0	215	38	23	33	4	1.77
139105--139309	101	2.0	101	92	0	338	38	22	32	6	1.80
139210--139443	42	5.6	42	92	0	378	36	20	32	9	1.86
139071--139351	143	2.0	143	87	1	411	37	22	32	7	1.83
139025--139393	185	2.0	185	86	2	508	37	21	32	8	1.85

Tables:   1   2