genome.fa.s404.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold404
Parameters: 2 7 7 80 10 50 1000
Length:  638648

Tables:   1   2   3   4   

This is table  4  of  4  ( 431 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
509050--509091	21	2.0	22	90	4	68	40	11	14	33	1.82
512129--512163	2	17.5	2	100	0	70	51	0	0	48	1.00
518345--518408	23	2.7	24	73	9	69	53	7	3	35	1.46
519600--519647	20	2.3	22	85	7	64	54	8	16	20	1.68
531082--531153	20	3.6	20	80	0	81	31	12	9	45	1.74
532130--532204	20	3.8	20	76	0	78	36	13	10	40	1.79
532130--532207	40	2.0	39	84	2	102	35	12	11	39	1.80
533113--533169	24	2.6	21	80	17	71	17	8	8	64	1.46
533119--533168	24	2.2	22	92	7	82	14	6	8	72	1.27
540361--540386	13	2.0	13	100	0	52	38	15	15	30	1.88
542604--542648	21	2.1	21	84	8	56	53	4	20	22	1.63
544452--544482	15	2.1	15	93	0	53	48	16	22	12	1.80
546496--546575	20	3.8	20	75	15	79	26	15	15	43	1.85
546561--546599	13	3.0	13	96	0	69	30	17	15	35	1.91
546720--546765	21	2.2	20	81	11	58	32	19	4	43	1.71
549141--549166	13	2.0	13	100	0	52	38	15	15	30	1.88
550588--551052	27	17.0	27	92	1	723	23	33	14	29	1.94
550588--551052	109	4.3	109	90	3	747	23	33	14	29	1.94
551035--551522	32	16.2	32	89	4	457	28	34	19	18	1.95
551246--551575	28	11.4	28	83	9	364	27	31	18	22	1.97
550625--551525	27	31.4	28	89	4	540	25	34	16	22	1.96
550881--551575	96	7.9	83	83	9	425	27	33	17	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
550908--551593	64	11.6	56	83	9	399	27	33	18	20	1.96
552154--552228	20	3.8	20	78	0	87	34	13	12	40	1.81
552154--552231	40	2.0	39	87	2	111	34	12	12	39	1.82
553137--553192	23	2.6	21	84	13	78	17	8	8	64	1.48
553143--553191	23	2.2	21	92	7	80	14	6	8	71	1.29
568662--568689	11	2.5	11	100	0	56	92	7	0	0	0.37
568661--568697	19	2.1	19	90	10	60	89	8	2	0	0.58
569937--571101	28	41.0	28	84	5	1120	29	29	17	23	1.97
569937--571101	56	20.5	56	85	5	1371	29	29	17	23	1.97
571957--572081	20	5.7	20	72	18	106	30	17	12	40	1.86
572978--573026	22	2.2	23	85	10	66	32	18	10	38	1.84
576442--576480	20	1.9	21	84	5	53	41	12	5	41	1.65
580591--580637	21	2.3	21	76	23	55	42	4	19	34	1.70
580758--580796	13	3.0	13	96	0	69	35	15	17	30	1.91
580782--580860	20	3.7	20	78	15	77	44	15	15	25	1.85
584695--584739	22	2.1	21	84	8	56	22	17	4	55	1.60
586332--586361	10	3.1	10	95	4	53	36	10	30	23	1.87
586386--586416	10	3.1	10	95	0	53	41	3	29	25	1.71
586440--586576	53	2.6	53	95	1	247	26	17	18	37	1.93
586564--586618	21	2.7	20	80	5	65	30	12	16	40	1.86
586657--586697	21	2.0	21	85	9	57	36	12	12	39	1.80
589900--589952	21	2.5	21	90	0	79	33	16	13	35	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
591311--591383	20	3.7	20	75	12	78	35	13	12	38	1.83
591311--591388	40	2.0	39	87	7	113	34	12	12	39	1.82
598417--598470	16	3.2	17	80	17	60	72	9	12	5	1.27
598776--598814	20	1.9	21	84	5	53	46	12	23	17	1.83
599748--600384	27	23.3	27	90	1	889	24	33	14	28	1.94
599748--600674	82	11.0	82	85	5	935	26	32	15	25	1.95
599811--601204	28	48.8	28	83	7	1105	26	31	16	24	1.96
599811--601204	175	8.1	173	83	7	1010	26	31	16	24	1.96
601764--601834	20	3.6	19	81	5	88	33	14	9	42	1.78
606211--606319	52	2.1	52	87	3	157	28	22	8	41	1.82
609647--609721	20	3.8	20	80	3	80	40	12	13	34	1.81
609644--609721	40	2.0	39	87	2	111	39	12	12	34	1.82
610247--611419	28	40.9	28	87	5	1544	22	16	32	28	1.96
610247--611421	57	20.5	57	88	3	1632	22	16	32	28	1.96
610247--611420	29	40.9	29	88	3	1643	22	16	32	28	1.96
612648--612693	1	46.0	1	82	0	56	0	2	6	91	0.50
612638--612689	22	2.3	22	86	6	68	1	3	7	86	0.76
612651--612693	16	2.6	16	88	3	68	0	2	6	90	0.52
612638--612693	10	5.1	11	79	16	55	1	3	7	87	0.72
626695--626769	20	3.8	20	80	3	80	40	12	13	34	1.81
626692--626769	40	2.0	39	87	2	111	39	12	12	34	1.82
629348--629372	13	1.9	13	100	0	50	32	20	16	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
629328--629391	32	2.0	33	90	3	103	28	15	15	40	1.88
634559--634615	17	3.4	16	75	15	53	70	1	28	0	0.98
637195--637231	18	1.9	19	89	10	58	27	0	72	0	0.84
637878--637947	30	2.3	31	78	9	81	18	1	4	75	1.04
638378--638487	1	110.0	1	94	0	193	97	1	0	0	0.21

Tables:   1   2   3   4

The End!