genome.fa.s418.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold418
Parameters: 2 7 7 80 10 50 1000
Length:  251372

Tables:   1   2   

This is table  1  of  2  ( 190 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39--81	17	2.5	17	85	14	61	41	0	0	58	0.98
498--548	23	2.2	24	89	6	79	31	0	3	64	1.11
3183--3215	16	2.1	16	94	0	57	84	6	9	0	0.76
3423--3452	2	15.0	2	100	0	60	50	0	0	50	1.00
11996--12064	22	3.2	22	76	19	65	68	0	2	28	1.04
11996--12055	22	2.6	22	84	10	77	70	0	3	26	1.03
12558--12602	21	2.1	21	95	0	81	8	15	24	51	1.72
14414--14452	18	2.2	18	90	4	62	10	15	23	51	1.73
15400--15435	16	2.2	16	90	0	54	8	13	38	38	1.75
20614--20644	4	7.8	4	92	0	53	25	0	19	54	1.44
22556--22604	20	2.5	20	82	0	62	10	48	4	36	1.56
26610--26658	20	2.5	20	79	0	53	10	46	4	38	1.57
27149--27177	11	2.5	12	88	11	51	37	0	0	62	0.96
27605--27662	23	2.6	23	89	8	84	36	0	3	60	1.14
27618--27675	23	2.5	24	86	8	75	46	0	1	51	1.11
27911--27950	16	2.4	17	83	4	55	50	0	2	47	1.14
30267--30298	15	2.1	16	94	5	57	84	6	9	0	0.78
31238--31266	14	2.0	15	93	6	51	44	6	0	48	1.29
31858--31963	49	2.2	49	100	0	212	24	16	25	33	1.95
39119--39187	22	3.2	22	76	19	65	68	0	2	28	1.04
39119--39178	22	2.6	22	84	10	77	70	0	3	26	1.03
39677--39721	21	2.1	21	100	0	90	8	17	24	48	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41520--41558	18	2.2	18	90	4	62	10	15	23	51	1.73
41921--41957	2	19.0	2	94	5	67	48	0	0	51	1.00
47482--47512	4	7.8	4	92	0	53	25	0	19	54	1.44
49424--49472	20	2.5	20	82	0	62	10	48	4	36	1.56
53952--54004	20	2.7	20	82	2	63	13	47	5	33	1.66
54495--54523	11	2.5	12	88	11	51	37	0	0	62	0.96
54949--55008	24	2.6	24	89	5	88	33	0	5	61	1.17
54949--55020	24	3.1	24	86	7	78	38	0	4	56	1.18
55528--55552	13	1.9	13	100	0	50	40	0	0	60	0.97
56979--57022	2	22.0	2	95	0	79	47	0	2	50	1.13
63038--63106	22	3.2	22	76	19	65	68	0	2	28	1.04
63038--63097	22	2.6	22	84	10	77	70	0	3	26	1.03
63599--63641	21	2.0	21	100	0	86	9	18	23	48	1.76
65458--65496	18	2.2	18	90	4	62	10	15	23	51	1.73
65453--65496	18	2.5	17	85	3	61	13	13	22	50	1.77
77447--77490	11	3.8	11	88	11	54	86	9	4	0	0.70
77446--77507	14	4.5	13	83	15	72	85	9	4	0	0.73
77448--77507	23	2.7	22	82	10	77	85	10	5	0	0.75
77446--77507	28	2.3	27	86	8	81	85	9	4	0	0.73
78487--79265	59	13.4	59	84	6	891	25	28	20	25	1.99
78523--79265	175	4.3	174	88	5	1054	26	28	20	25	1.99
80093--80160	19	3.9	19	78	21	85	35	11	14	38	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80114--80138	13	1.9	13	100	0	50	36	16	16	32	1.90
80095--80157	32	2.0	32	96	0	117	34	12	15	36	1.86
80200--80225	13	2.0	13	100	0	52	30	15	15	38	1.88
80180--80246	33	2.0	33	88	0	98	26	14	14	43	1.85
82697--82768	28	2.6	28	86	0	90	22	33	19	25	1.97
82722--82925	78	2.6	78	82	2	230	24	29	17	28	1.97
86067--86122	24	2.4	24	87	3	87	50	0	0	50	1.00
86818--86844	13	2.1	13	100	0	54	48	22	14	14	1.81
91849--91891	14	3.0	14	80	6	59	27	0	9	62	1.25
92037--92090	19	2.8	19	80	0	72	48	11	9	31	1.70
94133--94225	31	3.0	30	75	12	89	55	12	4	26	1.55
97294--97322	2	14.5	2	100	0	58	48	0	0	51	1.00
97481--97519	2	19.5	2	100	0	78	48	0	0	51	1.00
98204--98263	27	2.2	27	81	3	75	45	10	11	33	1.74
104016--104056	19	2.2	19	86	8	57	68	0	0	31	0.90
104016--104085	33	2.2	32	81	2	77	62	0	0	37	0.95
104030--104157	32	3.9	33	72	18	97	58	1	0	39	1.13
104012--104163	40	3.9	38	67	21	93	59	1	0	38	1.11
104105--104154	22	2.4	20	83	12	57	56	2	2	40	1.22
104441--104495	11	5.3	11	78	12	62	38	0	0	61	0.96
104450--104504	8	6.5	8	76	19	58	40	0	0	60	0.97
104441--104509	11	6.5	10	74	11	57	39	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104441--104525	27	3.1	27	80	14	86	41	1	0	57	1.06
108660--108690	15	2.1	15	93	0	53	48	0	3	48	1.17
109023--109063	19	2.2	19	95	4	75	36	2	0	60	1.10
109032--109072	19	2.2	19	90	0	64	43	7	0	48	1.30
109395--109437	23	1.9	22	85	4	59	62	0	2	34	1.08
112250--112274	13	1.9	13	100	0	50	28	0	0	72	0.86
113243--113283	20	2.0	21	86	13	59	43	0	0	56	0.99
113605--113637	16	2.1	16	100	0	66	39	6	18	36	1.75
117372--117420	24	2.0	25	84	11	66	48	0	2	48	1.12
118696--118749	14	3.8	15	76	9	51	53	0	0	46	1.00
118761--118825	33	1.9	34	84	9	89	58	6	3	32	1.38
119198--119272	33	2.4	31	75	18	75	40	0	0	60	0.97
119207--119276	23	3.1	22	83	8	79	44	0	0	55	0.99
120140--120212	29	2.5	30	84	10	89	47	0	1	50	1.09
120209--120321	5	23.2	5	71	21	80	41	0	0	58	0.98
120194--120283	29	3.0	29	76	11	85	43	0	0	56	0.99
120228--120371	32	4.6	33	69	25	91	43	0	0	56	0.99
120204--120384	17	10.4	19	70	19	80	41	0	0	58	0.98
120129--120353	73	3.0	72	72	16	183	43	0	0	56	1.03
120282--120393	32	3.5	32	67	19	81	41	0	0	58	0.98
121119--121154	19	1.9	19	88	5	56	58	0	2	38	1.13
121903--121947	3	15.0	3	100	0	90	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
122549--122600	27	1.9	27	85	14	72	51	0	0	48	1.00
122789--122957	18	9.8	18	68	24	82	41	0	0	58	0.98
122793--122957	56	2.9	55	75	14	158	41	0	0	58	0.98
122793--122866	20	3.9	20	70	20	68	40	0	0	59	0.97
122846--122920	32	2.4	32	84	8	93	48	0	0	52	1.00
122892--122952	24	2.5	24	76	7	61	42	0	0	57	0.98
122911--122958	11	4.1	12	76	13	55	33	0	0	66	0.92
122911--122958	24	2.0	24	84	11	64	33	0	0	66	0.92
124367--124407	16	2.6	17	77	14	52	70	4	0	24	1.06
126247--126290	21	2.1	21	87	4	63	40	0	6	52	1.28
130582--130615	2	17.0	2	100	0	68	0	50	0	50	1.00
130628--130671	2	22.0	2	90	0	70	54	0	0	45	0.99
141613--141680	24	2.9	24	83	16	81	45	0	0	54	0.99
141902--141934	5	6.4	5	96	3	57	81	0	0	18	0.68
142305--142366	29	2.1	29	85	11	83	51	0	0	48	1.00
142172--142532	132	2.8	132	86	3	505	47	2	4	45	1.34
142571--142723	21	7.3	22	73	14	83	52	7	3	36	1.47
142551--142723	42	4.2	41	73	8	100	52	8	3	36	1.48
142830--142870	21	2.0	21	90	0	64	58	0	2	39	1.11
144843--144882	21	1.9	21	90	10	64	40	5	22	32	1.76
148261--148301	21	1.9	22	85	5	57	36	4	21	36	1.75
148366--148394	12	2.4	12	100	0	58	6	10	20	62	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
153783--153841	23	2.6	21	74	12	55	47	0	1	50	1.11
158613--158690	29	2.6	32	70	11	76	67	2	25	3	1.20
159694--159727	13	2.5	13	85	4	50	55	2	0	41	1.15
159882--159911	13	2.4	13	94	5	53	23	0	3	73	0.98
162773--162818	16	3.0	16	73	23	53	41	0	2	56	1.11
162839--162904	22	3.2	20	81	10	80	33	3	0	63	1.10
162831--162890	11	5.6	11	77	15	63	28	1	1	68	1.09
166618--166655	17	2.2	17	90	0	58	52	7	10	28	1.64
167456--167586	52	2.5	52	81	4	149	37	15	23	23	1.93
167680--167992	52	6.1	52	76	5	199	36	12	23	27	1.91

Tables:   1   2