genome.fa.s422.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold422
Parameters: 2 7 7 80 10 50 1000
Length:  263912

Tables:   1   2   

This is table  2  of  2  ( 187 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
186056--186112	5	11.8	5	78	14	66	33	0	1	64	1.04
186036--186121	24	3.7	24	80	10	81	33	0	2	63	1.07
186056--186107	19	2.8	18	91	2	77	32	0	1	65	1.04
186061--186122	19	3.3	19	72	28	53	30	0	3	66	1.08
186070--186127	29	2.0	28	80	9	64	31	0	5	63	1.16
190594--190623	8	3.8	8	90	0	51	83	0	0	16	0.65
190767--190839	22	3.3	22	80	0	92	36	12	10	39	1.78
191180--191236	2	27.5	2	83	13	71	43	1	3	50	1.29
191383--191425	22	2.0	22	85	0	59	37	4	9	48	1.56
191679--192444	53	14.9	52	78	11	762	38	1	6	54	1.35
191679--192444	158	5.0	157	77	12	713	38	1	6	54	1.35
192156--192264	51	2.4	44	73	24	107	39	1	5	53	1.35
192404--192436	10	3.4	10	87	4	50	48	0	0	51	1.00
192347--192474	52	2.5	53	79	13	140	46	2	3	47	1.31
192487--192535	20	2.5	21	77	12	59	22	28	8	40	1.82
193206--193279	27	2.7	27	83	4	78	50	6	8	35	1.59
193471--193525	28	1.9	29	85	3	76	38	3	9	49	1.52
194155--194317	65	2.5	65	78	3	157	47	9	13	30	1.74
194688--194755	26	2.6	26	79	6	75	45	1	8	44	1.44
197316--197377	27	2.3	26	76	10	63	59	0	0	40	0.97
200704--200738	2	17.5	2	100	0	70	0	48	0	51	1.00
200742--200793	2	26.5	2	84	3	70	42	1	3	51	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
207669--207705	18	2.1	18	100	0	74	35	27	5	32	1.79
211415--211481	33	2.0	33	88	0	98	34	11	13	40	1.81
211435--211459	13	1.9	13	100	0	50	36	16	16	32	1.90
211522--211546	13	1.9	13	100	0	50	32	16	16	36	1.90
211555--211682	52	2.5	52	94	3	224	33	17	17	30	1.94
215556--215608	21	2.5	21	75	6	54	37	26	1	33	1.68
217262--217309	8	5.8	8	80	7	51	14	2	2	81	0.88
217261--217311	9	6.0	8	80	11	57	15	1	1	80	0.89
217261--217311	17	2.9	17	91	2	75	15	1	1	80	0.89
218080--218114	13	2.5	14	90	9	54	11	5	11	71	1.30
218405--218443	2	19.5	2	100	0	78	51	0	0	48	1.00
221308--221564	89	2.9	88	83	4	327	38	14	17	30	1.89
221429--221715	148	1.9	149	84	2	380	37	13	13	34	1.85
221571--221769	89	2.2	89	85	3	258	37	14	16	32	1.89
221334--221769	237	1.8	237	85	3	619	37	14	15	31	1.89
225226--225274	24	2.0	25	84	4	64	67	6	0	26	1.14
225742--225813	32	2.3	33	80	9	87	43	0	0	56	0.99
226577--226751	89	2.0	90	88	3	264	39	14	11	34	1.83
233078--233141	20	3.2	20	82	4	67	50	17	3	29	1.61
233340--233372	16	2.1	16	88	11	50	15	15	6	63	1.49
233338--233378	17	2.4	17	80	19	50	19	14	4	60	1.51
235816--236326	140	3.7	138	81	6	541	45	11	9	34	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
237062--237891	166	5.0	167	78	8	590	50	8	10	30	1.66
237135--237778	337	1.9	336	81	5	775	51	8	10	29	1.67
237062--237778	166	4.3	168	81	8	657	50	9	10	29	1.68
237296--237853	171	3.4	160	84	9	644	53	7	10	28	1.61
239004--239156	43	3.5	43	71	10	123	49	13	20	17	1.80
238928--239265	85	4.0	87	77	6	284	47	12	21	19	1.82
238897--239209	170	1.8	170	82	4	407	46	11	22	20	1.82
240173--240203	2	15.5	2	100	0	62	51	0	48	0	1.00
241507--241533	2	13.5	2	100	0	54	48	0	0	51	1.00
242109--242167	29	2.0	31	83	12	79	61	1	3	33	1.23
243271--243309	20	1.9	21	85	15	55	48	2	0	48	1.15
246071--246143	23	3.3	23	72	14	71	43	9	10	35	1.73
246062--246151	44	2.0	44	89	4	137	42	8	12	36	1.74
246062--246125	21	3.0	21	73	15	67	43	9	10	35	1.72
246484--246532	21	2.3	21	100	0	98	26	22	8	42	1.81
247135--247181	23	2.0	24	83	4	60	51	14	17	17	1.77
247515--247555	11	3.5	11	81	12	55	78	0	19	2	0.87
255362--256316	27	35.0	27	91	2	1534	22	34	14	28	1.93
255362--256316	273	3.5	271	93	1	1556	22	34	14	28	1.93
256313--256806	32	15.4	32	94	2	848	31	33	18	16	1.93
256827--256957	45	2.8	47	80	7	133	21	26	21	30	1.98
258046--258080	16	2.1	17	89	5	54	82	0	17	0	0.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
258052--258081	10	3.0	10	95	0	51	86	0	13	0	0.57

Tables:   1   2

The End!