genome.fa.s428.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold428
Parameters: 2 7 7 80 10 50 1000
Length:  186993

Tables:   1   2   

This is table  1  of  2  ( 160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1168--1245	31	2.5	31	91	4	122	42	12	14	30	1.83
1368--1400	17	1.9	17	93	0	57	33	0	3	63	1.10
1593--1630	2	19.0	2	100	0	76	50	0	0	50	1.00
4522--4553	2	16.0	2	100	0	64	50	0	0	50	1.00
7085--7120	18	2.0	18	88	0	54	22	0	0	77	0.76
7151--7189	8	4.8	8	83	3	51	25	0	2	71	0.98
7145--7196	27	1.9	27	84	7	70	28	0	1	69	0.99
14651--14799	22	6.6	23	69	13	73	47	2	0	48	1.20
18076--18121	17	2.7	18	80	10	60	34	2	8	54	1.43
18147--18183	19	1.9	19	89	10	58	48	0	0	51	1.00
19417--19458	17	2.4	17	84	4	57	45	2	0	52	1.13
20172--20205	17	2.0	17	88	11	52	64	0	0	35	0.94
22538--22583	19	2.4	19	85	10	58	67	0	2	30	1.03
30660--30730	32	2.2	32	92	0	124	36	16	12	33	1.87
30668--30731	19	3.7	19	70	23	68	37	15	12	34	1.85
31338--31368	15	2.1	15	100	0	62	25	0	54	19	1.44
37155--37198	19	2.4	18	81	7	61	47	0	2	50	1.13
38758--38806	24	2.0	24	88	0	71	20	18	12	48	1.79
39456--39527	35	2.0	35	82	12	85	33	2	0	63	1.08
40930--40963	15	2.1	17	89	10	54	44	0	0	55	0.99
40928--40992	24	2.6	25	82	4	69	53	0	0	46	1.00
40952--41033	36	2.3	37	76	18	84	56	1	1	41	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41280--41343	25	2.7	23	78	14	67	37	1	1	59	1.16
41575--41616	13	3.0	14	79	10	50	54	0	0	45	0.99
44550--44584	17	2.1	17	88	0	52	22	8	14	54	1.67
44703--44741	18	2.2	18	86	9	53	61	0	5	33	1.18
44920--45001	26	3.1	27	79	11	82	47	1	0	51	1.08
46209--46453	121	2.0	122	98	0	474	31	13	25	29	1.94
49636--49684	25	2.0	25	83	0	62	57	0	0	42	0.99
56830--56877	25	1.9	25	83	8	62	45	0	0	54	0.99
57119--57157	15	2.6	15	88	8	53	51	2	2	43	1.29
58923--58972	24	2.1	24	88	0	73	36	16	36	12	1.85
58965--59038	18	4.3	17	72	19	55	47	0	43	9	1.36
58983--59053	15	4.7	15	77	10	65	49	0	42	8	1.33
63613--63656	21	2.0	22	83	12	56	38	0	2	59	1.10
63898--63932	17	2.1	17	89	10	54	28	0	0	71	0.86
63929--64014	30	2.7	31	77	16	79	51	0	3	45	1.18
65052--65136	44	2.0	41	84	6	107	47	10	2	40	1.51
66044--66127	41	2.0	41	97	0	159	39	14	19	27	1.90
69905--69970	29	2.2	30	84	7	91	42	1	1	54	1.18
70422--70463	18	2.3	18	84	8	50	57	4	2	35	1.33
70492--70552	20	3.1	20	80	15	65	39	0	3	57	1.15
70834--70885	13	4.0	13	80	9	52	57	0	0	42	0.98
70826--70895	30	2.4	30	83	11	83	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70799--70885	27	3.3	26	76	13	63	54	0	0	45	1.00
70846--70923	29	2.7	28	80	11	79	66	0	1	32	1.00
70891--70927	19	1.9	19	89	10	58	70	0	2	27	1.01
71449--71551	27	3.8	26	71	19	68	48	0	0	50	1.07
71478--71576	21	4.5	21	69	19	60	49	0	0	50	1.00
71479--71521	15	2.9	15	82	6	52	46	0	0	53	1.00
71479--71588	32	3.3	32	77	21	102	49	0	0	50	1.07
71548--71601	27	2.0	27	85	0	72	46	1	0	51	1.11
71592--71635	17	2.6	17	79	13	56	27	0	0	72	0.85
71580--71631	24	2.1	26	85	7	72	32	0	0	67	0.91
74180--74265	40	2.1	41	91	2	138	43	16	6	33	1.75
74357--74442	24	3.7	23	75	16	79	63	2	2	31	1.19
74389--74442	11	4.7	11	77	13	56	68	0	0	31	0.90
74541--74579	19	2.1	19	100	0	78	10	5	15	69	1.34
74546--74589	19	2.3	19	84	4	52	18	9	9	63	1.49
74623--74647	2	12.5	2	100	0	50	52	0	0	48	1.00
77745--77801	15	3.9	15	76	4	62	45	19	5	29	1.72
77782--77869	22	3.9	22	74	11	72	42	11	12	34	1.79
82573--82668	17	5.7	17	72	19	67	60	2	1	36	1.15
84162--84252	46	2.0	47	82	6	114	26	4	2	67	1.21
85648--85695	2	24.0	2	100	0	96	50	0	0	50	1.00
85801--85828	2	14.0	2	100	0	56	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87188--87222	2	17.5	2	100	0	70	0	48	0	51	1.00
88003--88028	3	8.7	3	100	0	52	34	30	0	34	1.58
89370--89413	3	14.7	3	100	0	88	65	0	0	34	0.93
89896--89937	21	2.0	22	90	4	68	26	11	9	52	1.68
90347--90388	3	14.0	3	100	0	84	66	0	0	33	0.92
93526--93595	9	7.6	9	73	20	56	65	0	0	34	0.93
97609--97658	25	2.0	25	88	7	75	50	2	4	44	1.32
97673--97705	15	2.2	15	89	10	50	54	0	0	45	0.99
97886--97951	13	4.6	14	77	17	64	48	0	0	51	1.00
97877--97953	32	2.4	32	89	6	113	48	0	0	51	1.00
98020--98117	14	6.9	14	71	13	67	54	2	3	40	1.28
98016--98115	28	3.5	28	76	15	89	53	2	3	42	1.28
98075--98104	15	2.0	15	93	0	51	60	3	3	33	1.30
98111--98174	23	2.9	23	73	13	62	50	0	0	50	1.00
99389--99454	34	1.9	35	84	3	89	36	9	4	50	1.55
101425--101476	16	3.2	16	77	0	59	34	11	9	44	1.73
102632--102662	15	2.0	16	93	6	55	38	9	0	51	1.35
102695--102733	19	2.1	19	85	0	51	25	2	5	66	1.25
110601--110643	16	2.8	16	82	3	52	67	0	2	30	1.03
112515--112584	34	2.0	35	94	2	124	42	18	11	27	1.84
116752--116811	29	2.0	30	81	9	70	55	0	0	45	0.99
116954--117008	15	3.5	15	74	16	58	47	7	0	45	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116998--117085	36	2.5	36	79	18	96	39	5	2	52	1.38
117076--117127	12	4.1	12	80	11	50	34	3	0	61	1.14
117318--117394	18	4.6	17	74	22	56	58	1	0	40	1.06
122196--122227	2	16.0	2	100	0	64	0	0	50	50	1.00
122531--123008	71	6.8	71	88	4	661	38	2	9	48	1.51
124550--124619	29	2.5	28	79	11	79	60	2	1	35	1.21
124576--124620	13	3.2	14	81	12	56	66	0	0	33	0.92
125264--125320	17	3.0	18	72	22	62	38	3	5	52	1.41
125264--125343	39	2.1	39	86	9	110	38	2	5	53	1.36
125368--125414	21	2.2	22	88	3	69	44	0	2	53	1.12
126458--126506	19	2.5	21	90	9	77	40	0	0	59	0.98
126469--126499	15	2.1	15	93	0	53	41	0	0	58	0.98
126458--126523	20	3.3	21	76	17	61	40	1	0	57	1.08
126819--126906	30	3.0	30	81	6	108	53	1	4	40	1.29
127491--127611	5	25.2	5	72	20	89	59	0	0	39	1.03
127500--127603	11	10.0	11	72	18	89	59	0	0	39	1.04
127491--127616	47	2.7	46	83	13	134	59	0	0	39	1.03
127492--127616	8	15.0	8	69	24	64	59	0	0	40	1.03
128320--128388	18	3.9	18	75	14	63	33	2	0	63	1.09
128576--128709	11	12.3	11	67	21	61	62	0	0	36	1.01
128574--128706	25	5.0	25	72	15	88	62	0	0	36	1.01
128570--128709	41	3.4	40	77	20	121	62	0	0	36	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
128597--128716	15	8.0	16	72	22	75	63	0	0	36	0.95
131193--131276	38	2.2	38	89	6	125	50	0	0	50	1.00
134328--134358	6	5.3	6	96	3	55	51	0	0	48	1.00
136439--136471	15	2.2	15	94	0	57	12	15	36	36	1.84
137091--137162	32	2.5	26	71	25	63	45	0	1	52	1.09
137102--137154	16	3.2	16	75	21	56	45	0	1	52	1.11
137087--137154	16	4.2	16	70	20	52	44	0	1	54	1.09
137410--137455	15	2.9	16	80	9	58	39	0	0	60	0.97
150806--150936	11	12.0	11	66	21	62	50	0	0	49	1.00
150804--150883	18	4.7	18	70	22	57	56	0	0	43	0.99

Tables:   1   2