Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold431
Parameters: 2 7 7 80 10 50 1000
Length:  404915

Tables:   1   2   3   

This is table  3  of  3  ( 300 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
261126--261184
27
2.2
27
78
6
66
45
1
0
52
1.10
261768--261828
23
2.7
23
75
14
63
42
11
1
44
1.50
261904--261964
31
2.0
31
87
6
88
37
4
4
52
1.45
280007--280041
18
1.9
18
94
0
61
0
17
0
82
0.66
291291--291320
3
10.0
3
100
0
60
0
33
0
66
0.92
293508--293540
2
16.5
2
100
0
66
51
0
0
48
1.00
296752--296790
4
9.8
4
100
0
78
74
0
25
0
0.82
301222--301267
3
15.3
3
100
0
92
34
0
0
65
0.93
305270--305307
6
6.2
6
90
3
58
0
78
0
21
0.74
309673--309703
2
15.5
2
100
0
62
0
48
0
51
1.00
311902--311990
44
2.0
44
100
0
178
32
13
17
35
1.89
312216--312248
2
16.5
2
100
0
66
48
0
0
51
1.00
313721--313768
22
2.2
22
84
0
60
25
6
16
52
1.67
314213--314243
15
2.1
15
100
0
62
25
6
38
29
1.81
315911--315938
3
9.3
3
100
0
56
64
0
0
35
0.94
316254--316296
15
2.8
15
83
16
61
2
25
0
72
0.97
319577--319607
2
15.5
2
100
0
62
0
48
0
51
1.00
320737--320769
3
11.0
3
100
0
66
33
0
0
66
0.92
326458--326629
83
2.0
88
83
6
219
37
9
5
48
1.58
327513--327618
39
2.7
38
78
8
115
41
9
1
47
1.47
339663--339712
3
16.7
3
100
0
100
68
0
0
32
0.90
341371--341786
28
14.3
28
77
8
334
24
17
30
28
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
341452--341778
117
2.9
112
79
8
284
24
18
29
27
1.98
341440--341895
84
5.4
84
76
7
341
26
16
30
26
1.97
341784--342314
27
19.6
27
82
5
597
32
15
28
23
1.95
341621--342314
108
6.4
108
80
5
641
30
16
28
24
1.96
343658--343704
20
2.3
21
82
10
62
4
8
12
74
1.19
347461--347542
41
2.0
41
95
0
146
24
31
17
26
1.97
348439--348651
97
2.2
96
81
5
266
29
11
29
30
1.92
359970--360026
1
57.0
1
78
0
51
87
5
7
0
0.66
359968--360024
29
2.0
29
96
3
107
84
5
10
0
0.77
364260--364293
3
11.3
3
100
0
68
64
0
0
35
0.94
365184--365216
2
16.5
2
100
0
66
51
0
0
48
1.00
368266--368303
6
6.3
6
96
0
58
28
31
34
5
1.80
368569--368607
6
6.5
6
87
0
60
25
20
35
17
1.95
370041--370078
2
19.5
2
89
5
60
47
0
2
50
1.15
381420--381461
2
21.0
2
100
0
84
0
50
0
50
1.00
381885--381991
47
2.3
47
100
0
214
21
36
11
30
1.88
382218--382242
12
2.1
12
100
0
50
92
0
8
0
0.40
382673--382929
139
1.8
138
89
3
399
29
19
18
32
1.95
387554--387628
20
3.8
20
80
3
80
40
12
13
34
1.81
387551--387628
40
2.0
39
87
2
111
39
12
12
34
1.82
388267--389085
28
28.5
29
84
6
860
23
18
30
27
1.98
388264--389065
116
7.0
115
84
8
912
23
19
30
27
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
390300--390361
28
2.4
24
81
10
70
3
3
9
83
0.86
390330--390370
11
3.8
11
81
15
50
0
0
12
87
0.53
390329--390371
22
2.0
21
90
4
68
0
0
13
86
0.58
401574--402924
7
190.3
7
82
9
1039
1
7
54
36
1.39
401746--401829
15
5.8
15
84
9
97
14
1
42
41
1.53
402932--402999
26
2.7
26
82
13
79
8
11
45
33
1.72
402407--404637
7
296.4
7
77
17
1298
5
11
43
39
1.63
402908--403004
33
2.9
35
80
10
87
8
11
43
37
1.71
403091--403982
23
37.2
24
67
25
142
5
14
40
38
1.71
403243--403292
26
1.9
26
88
8
75
8
18
44
30
1.78
403340--403576
103
2.3
102
81
17
253
4
13
41
40
1.64
402807--403923
62
17.6
61
71
22
225
5
13
41
38
1.69
403636--404075
146
3.0
143
76
17
360
6
13
40
39
1.71
403803--403991
68
2.7
69
76
17
171
5
13
40
40
1.67
404337--404631
15
18.7
17
70
22
72
5
14
41
38
1.69
404662--404694
8
4.1
8
85
14
50
3
12
36
48
1.56

Tables:   1   2   3

The End!