genome.fa.s437.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold437
Parameters: 2 7 7 80 10 50 1000
Length:  325478

Tables:   1   2   3   

This is table  1  of  3  ( 243 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1754--1803	21	2.3	23	80	16	61	52	2	0	46	1.12
2189--2224	18	2.0	18	94	0	63	47	5	2	44	1.41
2775--2805	2	15.5	2	100	0	62	48	0	0	51	1.00
8031--8075	24	1.9	24	95	4	83	48	24	0	26	1.51
14149--14369	111	2.0	112	90	0	345	44	18	10	25	1.82
17647--17751	16	6.9	15	72	23	60	40	0	0	58	1.05
17710--17751	5	7.8	5	85	15	57	38	2	0	59	1.10
17669--17783	11	10.1	12	73	21	63	40	1	0	57	1.09
17952--17982	2	15.5	2	100	0	62	48	0	0	51	1.00
18174--18202	3	9.7	3	100	0	58	34	0	0	65	0.93
18359--18388	3	10.0	3	100	0	60	33	0	0	66	0.92
19675--19769	47	2.0	47	97	0	181	37	9	8	44	1.67
20080--20165	38	2.3	38	78	15	90	50	1	4	44	1.30
20100--20152	24	2.2	24	82	0	61	47	1	3	47	1.31
20141--20185	14	3.1	14	81	6	63	48	0	4	46	1.22
20141--20199	29	2.0	29	87	6	84	49	0	6	44	1.29
21052--21084	5	7.0	5	93	6	52	42	0	0	57	0.98
21053--21096	18	2.5	18	89	10	65	43	0	0	56	0.99
24811--24855	22	2.0	24	86	8	67	57	0	0	42	0.98
24816--24861	23	2.0	22	84	12	58	60	0	0	39	0.97
25607--25641	17	2.1	17	88	0	52	40	0	0	60	0.97
25640--25673	17	2.0	17	88	11	52	20	8	5	64	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26400--26442	10	4.3	10	78	0	50	53	0	0	46	1.00
26708--26748	21	2.0	19	86	13	55	60	0	0	39	0.96
27042--27069	2	14.0	2	100	0	56	50	0	0	50	1.00
31366--31408	16	2.7	16	92	0	68	69	0	0	30	0.88
31389--31473	32	2.6	33	88	5	120	57	0	0	42	0.98
31362--31474	15	7.2	16	71	26	91	61	0	0	38	0.96
31381--31479	51	2.0	49	82	7	119	59	0	0	40	0.97
32264--32303	18	2.2	18	90	4	62	42	25	0	32	1.55
32629--32705	40	1.9	40	97	0	145	35	12	12	38	1.82
33607--33635	3	9.7	3	100	0	58	34	0	0	65	0.93
34036--34065	3	10.0	3	100	0	60	33	0	0	66	0.92
35342--35370	11	2.5	12	94	5	51	31	3	0	65	1.09
39508--39551	3	14.7	3	95	0	79	65	0	2	31	1.05
42149--42183	2	17.5	2	100	0	70	0	48	0	51	1.00
43698--43730	2	16.5	2	93	0	57	51	0	48	0	1.00
44002--44109	11	10.5	11	75	19	65	36	3	0	59	1.22
43994--44053	19	3.2	19	71	22	54	36	3	0	60	1.14
44016--44095	16	5.0	17	64	20	55	35	2	1	61	1.18
44456--44502	24	2.0	24	83	8	60	44	8	2	44	1.46
44484--44561	28	2.8	27	76	19	79	51	7	0	41	1.31
44483--44561	29	2.9	28	76	14	92	50	7	0	41	1.31
46356--46448	48	2.0	47	89	6	143	43	2	1	53	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48170--48208	13	2.9	14	80	7	53	33	0	2	64	1.08
49048--49104	6	9.5	6	85	11	73	17	0	0	82	0.67
49048--49104	5	10.8	5	87	12	71	17	0	0	82	0.67
49048--49104	11	5.4	11	84	16	84	17	0	0	82	0.67
49372--49424	26	2.0	27	82	10	65	37	3	1	56	1.28
49365--49436	29	2.6	28	78	17	78	37	2	2	56	1.28
49539--49593	16	3.7	15	79	11	51	65	0	0	34	0.93
49539--49596	21	2.8	21	82	15	75	65	0	0	34	0.93
49539--49597	15	4.1	15	71	22	54	66	0	0	33	0.92
49885--49920	17	2.1	17	100	0	72	66	5	5	22	1.34
50291--50331	21	2.0	21	90	0	64	17	24	34	24	1.96
51973--52028	19	2.8	20	77	20	64	57	5	5	32	1.44
58037--58085	24	2.0	24	96	0	89	59	4	2	34	1.28
58028--58084	24	2.4	25	88	5	82	56	3	1	38	1.27
58258--58282	2	12.5	2	100	0	50	52	0	0	48	1.00
59009--59036	2	14.0	2	100	0	56	50	0	0	50	1.00
60090--60317	72	3.2	72	84	1	305	45	8	22	23	1.80
66886--66916	14	2.2	14	100	0	62	22	6	25	45	1.76
68022--68060	2	19.5	2	100	0	78	48	0	0	51	1.00
71536--71610	20	3.8	20	74	0	78	34	12	12	41	1.79
71536--71613	40	2.0	39	84	2	102	34	11	12	41	1.80
72528--72576	22	2.2	22	100	0	98	16	8	8	67	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72529--72583	22	2.6	21	88	5	58	20	9	9	61	1.52
78468--78515	21	2.2	21	85	3	60	37	14	2	45	1.57
79334--79377	20	2.2	20	83	0	52	36	4	47	11	1.60
83908--83951	20	2.2	20	83	0	52	36	4	47	11	1.60
85067--85121	17	3.2	17	82	5	65	38	0	1	60	1.08
85265--85299	9	3.9	9	88	0	52	20	2	0	77	0.90
85674--85705	10	2.8	12	81	18	50	68	0	0	31	0.90
86946--86988	18	2.3	20	80	15	56	55	0	0	44	0.99
88813--88947	6	23.0	6	70	18	81	48	0	2	48	1.13
88886--88947	33	1.9	32	83	9	81	48	0	0	51	1.00
90215--90254	16	2.4	17	84	16	57	32	0	5	62	1.17
90230--90271	22	1.9	22	85	9	59	30	0	4	64	1.14
90309--90405	48	2.0	48	91	0	158	25	6	22	45	1.76
94064--94088	12	2.1	12	100	0	50	84	0	0	16	0.63
96436--96533	34	2.9	33	73	21	94	47	0	0	52	1.00
96731--96795	25	2.4	28	83	16	84	46	0	0	53	1.00
97277--97311	2	17.5	2	100	0	70	48	0	0	51	1.00
98030--98072	22	1.9	23	85	4	61	53	4	4	37	1.43
99160--99196	19	2.0	20	89	10	60	62	0	5	32	1.18
101762--101941	91	2.0	90	91	1	288	40	16	18	25	1.90
106036--106235	109	1.9	108	82	2	258	37	5	11	46	1.61
106440--106479	19	2.0	20	85	4	55	42	7	0	50	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107800--107846	24	2.0	24	88	8	71	42	0	0	57	0.98
107948--108027	29	2.8	27	75	9	79	55	1	1	42	1.16
108295--108321	2	13.5	2	100	0	54	0	48	0	51	1.00
111004--111035	2	16.0	2	100	0	64	50	0	0	50	1.00
122126--122159	17	2.0	17	88	0	50	5	0	11	82	0.83
122417--122452	2	18.0	2	100	0	72	0	0	50	50	1.00
122747--122774	2	14.0	2	100	0	56	50	0	0	50	1.00
123728--123762	2	17.0	2	88	5	52	51	2	0	45	1.16
125512--125572	27	2.3	26	80	8	70	55	3	0	40	1.16
125911--126134	118	1.9	116	83	8	285	54	1	2	41	1.23
126128--126183	27	2.0	28	89	3	87	51	0	3	44	1.18
126199--126223	13	1.9	13	100	0	50	56	4	0	40	1.18
126200--126294	21	4.5	21	73	11	86	61	2	4	32	1.27
126197--126302	43	2.4	43	93	1	176	59	2	3	33	1.30
126555--126596	21	2.0	22	86	13	61	66	0	0	33	0.92
126585--126938	120	2.9	122	81	10	413	43	2	1	53	1.20
126588--126940	125	2.9	118	79	15	353	43	2	1	53	1.20
126608--127006	125	3.2	123	80	12	317	44	2	1	52	1.19
127146--127377	93	2.5	93	88	5	339	43	6	16	33	1.74
127315--127442	67	1.9	66	82	4	159	46	5	17	30	1.71
129468--129499	16	1.9	17	93	6	57	50	0	9	40	1.35
129544--130198	297	2.2	297	88	2	978	46	7	7	37	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
130476--130528	15	3.4	15	80	12	54	52	1	0	45	1.11
133707--133754	2	24.0	2	100	0	96	50	0	0	50	1.00
134491--134590	51	2.0	51	91	0	164	44	14	21	21	1.86
135572--135654	18	4.6	18	77	3	69	9	16	32	40	1.81
135584--135630	9	5.2	9	92	0	67	2	17	34	46	1.59
140905--141063	84	1.9	86	82	10	202	47	0	5	46	1.29
141106--141144	20	2.0	20	84	0	51	46	2	5	46	1.38
141819--141867	24	2.0	24	84	7	64	53	2	2	42	1.24
142369--142400	14	2.2	15	94	5	57	84	0	0	15	0.63
146030--146064	16	2.2	16	100	0	70	48	8	25	17	1.75

Tables:   1   2   3