genome.fa.s437.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold437
Parameters: 2 7 7 80 10 50 1000
Length:  325478

Tables:   1   2   3   

This is table  2  of  3  ( 243 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
147317--147412	50	1.9	48	83	10	122	53	11	15	19	1.72
148283--148339	23	2.6	23	69	5	55	50	0	0	49	1.00
148428--148488	22	2.8	22	76	16	65	50	0	0	49	1.00
148429--148513	27	3.1	27	73	14	84	52	0	0	47	1.00
148758--148798	16	2.6	16	92	7	66	56	0	0	43	0.99
148758--148808	16	3.1	16	83	8	59	52	0	0	47	1.00
151311--151343	17	1.9	17	100	0	66	30	12	45	12	1.78
157496--157535	2	20.0	2	100	0	80	50	0	0	50	1.00
161167--161196	3	10.0	3	100	0	60	33	0	0	66	0.92
162085--162117	12	2.6	13	85	4	50	60	3	0	36	1.12
162692--162717	12	2.2	12	100	0	52	46	23	0	30	1.53
169306--169345	20	1.9	22	85	10	57	57	0	15	27	1.38
169831--169891	31	2.0	31	83	6	79	45	3	0	50	1.17
169849--169898	17	2.7	19	75	15	59	42	4	0	54	1.19
169976--170007	16	2.0	17	88	11	50	43	0	0	56	0.99
178327--178379	3	17.7	3	100	0	106	32	0	0	67	0.91
178501--178544	20	2.2	20	88	4	63	65	0	0	34	0.93
182696--183067	188	2.0	179	87	6	532	42	18	13	25	1.87
183693--183847	15	10.9	15	70	19	77	57	0	0	42	0.98
183706--183748	11	3.8	11	77	17	52	62	0	0	37	0.95
183693--183761	29	2.5	29	84	11	83	59	0	0	40	0.97
183757--183847	28	3.4	28	69	23	63	57	0	0	42	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
183693--183832	43	3.3	44	78	16	127	56	0	0	43	0.99
183699--183847	29	5.2	28	69	22	82	57	0	0	42	0.98
184162--184243	18	4.5	19	72	17	59	47	0	0	52	1.00
184213--184260	25	2.0	23	88	8	69	52	0	0	47	1.00
184234--184292	23	2.5	23	77	2	64	42	3	1	52	1.28
184265--184296	17	1.9	17	93	6	57	40	0	3	56	1.15
185369--185430	17	3.3	19	73	11	65	58	0	0	41	0.98
185355--185456	36	2.7	38	77	20	122	52	1	0	45	1.12
185490--185518	3	9.7	3	100	0	58	65	0	0	34	0.93
185610--185757	15	10.0	15	72	14	85	44	1	1	52	1.17
185607--185757	44	3.4	45	77	8	134	45	1	1	52	1.17
185679--185757	14	5.1	14	69	23	52	43	1	1	54	1.16
185686--185724	20	2.0	20	94	0	69	43	2	2	51	1.29
187101--187188	22	4.3	21	72	19	71	56	0	0	43	0.99
187439--187489	17	3.1	17	85	2	68	39	3	1	54	1.30
187480--187532	6	9.7	6	76	15	53	66	0	0	33	0.92
187480--187553	26	2.6	28	77	12	80	64	0	0	35	0.94
187463--187565	20	5.3	20	74	19	85	59	0	0	40	0.98
190106--190160	24	2.2	26	81	12	71	45	0	1	52	1.11
198863--198970	55	2.0	55	96	0	198	48	0	6	45	1.28
199062--199093	6	5.3	6	100	0	64	62	0	0	37	0.95
202008--202047	14	2.7	15	84	7	55	32	0	2	65	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
202506--202569	16	4.1	16	76	20	57	37	1	0	60	1.06
209387--209470	19	4.8	18	72	20	79	47	2	0	50	1.14
210239--210295	22	2.7	21	79	12	62	52	0	0	47	1.00
210529--210593	2	32.5	2	100	0	130	50	0	49	0	1.00
211604--211667	27	2.5	26	80	14	71	56	0	0	43	0.99
211632--211692	19	3.2	18	75	9	59	49	0	1	49	1.10
214007--214031	8	3.1	8	100	0	50	40	0	0	60	0.97
214647--214701	8	7.0	8	77	10	51	36	0	10	52	1.37
215139--215192	15	3.2	18	77	17	62	74	0	0	25	0.83
216040--216081	21	2.0	22	90	4	68	54	0	4	40	1.21
217420--217462	21	2.0	21	86	0	59	16	13	30	39	1.87
218033--218067	15	2.2	16	90	5	54	65	0	0	34	0.93
220237--220267	7	4.4	7	95	0	53	61	0	0	38	0.96
220430--220473	4	11.0	4	80	0	52	29	4	0	65	1.12
220430--220470	16	2.6	16	100	0	82	29	4	0	65	1.13
228768--228821	16	3.4	16	76	18	51	51	0	0	48	1.00
229287--229456	29	5.8	30	84	7	192	57	3	0	38	1.20
229299--229440	59	2.4	58	86	11	184	59	2	0	38	1.15
230186--230254	34	2.0	34	100	0	138	40	2	17	39	1.64
230537--230837	152	2.0	152	97	0	575	34	19	14	31	1.92
233856--233888	2	16.5	2	93	0	57	45	0	51	3	1.16
234428--234495	21	3.0	21	73	23	59	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
245854--245913	30	1.9	32	90	6	97	48	0	1	50	1.11
246021--246060	15	2.5	17	80	19	50	47	0	0	52	1.00
246519--246605	19	4.8	19	71	14	67	37	0	1	60	1.04
246516--246608	45	2.1	44	82	9	109	37	0	1	61	1.03
246517--246605	36	2.5	37	81	9	103	38	0	1	60	1.04
253057--253114	3	19.3	3	100	0	116	67	0	0	32	0.91
254524--254554	10	3.0	10	95	4	53	67	0	0	32	0.91
256854--256927	26	2.7	28	73	8	73	36	1	0	62	1.04
256897--256954	15	3.9	15	70	4	55	39	0	0	60	0.97
257043--257089	25	1.9	24	91	4	76	53	0	0	46	1.00
258878--258918	11	3.2	13	76	16	50	46	0	2	51	1.14
259200--259265	32	2.0	33	83	13	84	42	1	0	56	1.08
260269--260314	19	2.5	18	86	6	65	52	0	0	47	1.00
262959--263027	28	2.6	27	82	15	90	52	0	0	47	1.00
263490--263516	2	13.5	2	100	0	54	48	0	0	51	1.00
264015--264051	2	18.5	2	100	0	74	48	0	0	51	1.00
264086--264136	15	3.3	15	78	5	57	37	0	0	62	0.95
264325--264384	13	4.5	13	72	10	50	55	0	0	45	0.99
264342--264380	16	2.2	16	86	13	51	56	0	0	43	0.99
264579--264604	2	13.0	2	100	0	52	50	0	0	50	1.00
269588--269646	26	2.3	27	91	8	104	55	0	0	44	0.99
269946--270007	31	2.0	31	93	0	106	50	1	1	46	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
269962--270000	20	2.0	19	90	5	60	53	0	0	46	1.00
269956--270005	11	4.7	11	74	18	52	50	2	0	48	1.12
271079--271103	12	2.1	12	100	0	50	60	0	8	32	1.26
271756--271782	1	27.0	1	100	0	54	0	0	0	100	0.00
279673--279707	2	17.5	2	100	0	70	51	0	0	48	1.00
280187--280224	7	5.3	7	85	14	51	28	2	0	68	1.03
280194--280224	16	1.9	16	93	0	53	29	3	0	67	1.06
282059--282105	22	2.1	23	84	4	60	42	4	17	36	1.68
282425--282467	20	2.2	20	95	0	77	55	23	6	13	1.62
283124--283436	37	8.9	37	67	14	126	51	7	2	37	1.45
283343--283399	29	2.0	29	96	0	105	54	8	0	36	1.32
284606--284670	31	2.1	31	97	0	121	53	18	9	18	1.70
294779--294920	70	2.0	71	94	2	250	42	14	14	28	1.84
295318--295436	59	2.0	59	98	0	229	32	18	11	36	1.87
297505--297579	20	3.8	20	78	0	87	34	13	12	40	1.81
297505--297582	40	2.0	39	87	2	111	34	12	12	39	1.82
298487--298542	22	2.5	23	94	5	105	17	10	8	62	1.52
298495--298549	22	2.6	21	88	5	58	20	9	9	61	1.52
304660--304734	36	2.1	36	85	5	98	72	9	12	6	1.29
306082--306568	27	18.0	27	86	5	646	24	32	14	28	1.94
306551--307248	32	21.8	32	93	2	1120	31	34	18	15	1.92
307774--307848	20	3.8	20	78	0	87	34	13	12	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
307774--307851	40	2.0	39	87	2	111	34	12	12	39	1.82
308759--308814	22	2.5	23	94	5	105	17	10	8	62	1.52
308767--308821	22	2.6	21	88	5	58	20	9	9	61	1.52
318987--319031	9	5.2	9	83	5	58	17	0	24	57	1.40
318989--319045	8	6.9	8	82	6	69	17	0	24	57	1.39
319218--319263	2	23.0	2	100	0	92	50	0	0	50	1.00
319316--319356	21	2.1	20	86	13	59	48	24	2	24	1.63
321611--321660	3	17.0	3	85	4	66	62	4	2	32	1.25
323017--323060	22	2.0	22	100	0	88	36	27	13	22	1.92
323150--323204	1	55.0	1	77	0	56	0	10	0	89	0.50

Tables:   1   2   3