genome.fa.s443.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold443
Parameters: 2 7 7 80 10 50 1000
Length:  318098

Tables:   1   2   3   

This is table  3  of  3  ( 291 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
257561--258579	82	12.4	81	91	2	1536	23	34	13	27	1.93
257561--258579	110	9.3	109	90	2	1553	23	34	13	27	1.93
258558--259154	32	18.7	32	93	1	975	29	33	18	18	1.95
260709--260757	23	2.1	23	100	0	98	16	8	8	67	1.40
260703--260757	23	2.5	21	88	11	92	18	10	9	61	1.54
264509--264535	2	13.5	2	100	0	54	48	0	0	51	1.00
266614--266666	26	2.0	26	100	0	106	56	3	11	28	1.51
268763--268834	30	2.6	27	72	23	67	38	0	1	59	1.06
274989--275042	23	2.4	22	82	11	65	50	1	1	46	1.23
275655--275689	2	17.5	2	100	0	70	48	0	0	51	1.00
275878--275929	25	2.1	25	88	0	77	53	0	19	26	1.45
275960--276097	50	2.8	50	90	0	222	31	17	21	29	1.96
280468--280579	50	2.2	50	92	3	181	33	19	16	30	1.95
280468--280605	50	2.8	49	82	8	170	32	18	20	28	1.96
281180--281227	25	2.0	24	84	11	64	58	0	0	41	0.98
281673--281748	32	2.6	27	73	23	73	53	1	1	43	1.17
283669--283735	13	5.2	13	71	18	52	2	32	1	62	1.19
284658--284707	18	2.7	19	74	22	52	50	4	4	42	1.40
285148--285180	2	17.0	2	93	6	59	51	0	0	48	1.00
288797--288860	33	1.9	33	93	0	110	37	20	14	28	1.91
290334--290391	24	2.3	26	88	5	84	34	25	13	25	1.93
290381--290446	27	2.4	27	87	5	89	24	9	19	46	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
290379--290468	27	3.4	27	82	7	80	23	8	21	46	1.79
290408--290477	24	2.8	24	77	14	70	21	8	22	47	1.78
293022--293067	21	2.1	22	88	4	67	32	19	28	19	1.96
294930--294987	24	2.3	26	88	5	84	34	25	13	25	1.93
294977--295042	27	2.4	27	87	5	89	24	9	19	46	1.78
294975--295064	27	3.4	27	82	7	80	23	8	21	46	1.79
295004--295073	24	2.8	24	77	14	70	21	8	22	47	1.78
297018--297055	2	19.0	2	100	0	76	50	0	0	50	1.00
297308--297424	58	2.0	58	100	0	234	40	13	5	41	1.67
297323--297413	28	3.2	28	61	11	67	42	14	5	37	1.69
299125--299175	25	2.0	25	96	0	93	41	7	17	33	1.79
302484--302548	29	2.3	29	89	10	107	20	4	20	55	1.61
302485--302586	29	3.8	28	80	14	94	22	4	24	48	1.70
302519--302588	24	2.8	24	78	6	68	24	5	25	44	1.76
304702--304747	21	2.1	22	84	4	58	30	19	30	19	1.97
306654--306718	29	2.3	30	92	7	109	20	6	20	53	1.66
306654--306756	29	3.9	28	80	14	96	22	5	24	47	1.73
306689--306758	24	2.8	24	78	6	68	24	5	25	44	1.76
308418--308451	15	2.3	15	94	0	59	38	32	5	23	1.79
310543--310581	2	19.5	2	100	0	78	48	0	0	51	1.00
311255--311300	16	2.8	17	80	6	58	63	2	2	32	1.19
312062--312115	28	2.0	27	86	10	76	48	1	1	48	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
312434--312469	18	2.1	18	90	10	58	61	0	0	38	0.96
312996--313068	27	2.7	27	71	12	69	57	0	0	42	0.98
314270--314406	67	2.0	67	100	0	274	35	10	7	47	1.65
314393--314436	2	22.0	2	100	0	88	50	0	0	50	1.00
314554--314578	13	1.9	13	100	0	50	72	0	0	28	0.86
317060--317113	17	3.3	17	72	23	53	57	3	0	38	1.17
317130--317169	20	2.0	20	95	0	71	50	12	10	27	1.72

Tables:   1   2   3

The End!