genome.fa.s445.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold445
Parameters: 2 7 7 80 10 50 1000
Length:  297477

Tables:   1   2   

This is table  2  of  2  ( 189 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
210615--210682	33	2.1	33	91	2	111	33	14	16	35	1.89
210736--210785	20	2.5	20	86	0	64	38	16	16	30	1.90
211648--211690	2	21.5	2	95	0	77	51	2	0	46	1.13
211992--212025	18	1.9	18	88	5	52	61	14	8	14	1.55
212250--212301	23	2.3	23	76	3	61	75	0	19	5	1.01
212251--212318	22	3.1	22	78	15	63	73	0	22	4	1.01
213756--213804	24	2.0	24	85	14	66	42	6	2	48	1.39
216324--216375	24	2.2	24	83	13	63	75	7	7	9	1.21
216544--216602	16	3.8	16	81	4	66	35	0	3	61	1.13
216702--216734	15	2.2	15	89	10	50	60	0	0	39	0.97
216787--216836	23	2.2	23	82	7	57	40	0	2	58	1.10
217281--217317	19	1.9	19	94	0	65	45	5	8	40	1.56
217789--217859	37	1.9	37	88	5	108	21	21	28	29	1.98
217980--218023	18	2.5	17	82	17	54	22	2	31	43	1.66
218086--218117	16	2.0	16	100	0	64	12	0	0	87	0.54
218088--218124	16	2.3	16	90	0	56	16	0	2	81	0.81
219448--219488	15	2.7	15	88	0	64	34	2	0	63	1.08
219777--219822	24	1.9	24	86	8	67	43	26	8	21	1.81
219819--219907	28	3.2	28	93	3	153	53	21	6	17	1.66
224422--224484	28	2.3	27	86	8	90	58	19	3	19	1.52
225501--225538	3	12.7	3	100	0	76	65	0	34	0	0.93
227614--227646	2	16.5	2	100	0	66	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
236599--236631	7	4.7	7	88	11	50	81	0	0	18	0.68
236599--236631	13	2.3	15	85	15	52	81	0	0	18	0.68
237314--237340	13	2.1	13	100	0	54	29	0	0	70	0.88
237419--237487	30	2.3	30	73	11	70	43	1	0	55	1.08
238210--238290	16	5.5	15	70	18	53	35	2	4	56	1.34
238185--238288	42	2.5	42	100	0	208	33	1	3	60	1.26
247100--247133	17	1.9	17	88	5	50	14	14	14	55	1.69
251492--251542	21	2.5	20	78	15	59	64	1	1	31	1.15
251510--251564	26	2.2	24	84	12	67	63	5	0	30	1.17
251510--251564	25	2.2	25	87	6	76	63	5	0	30	1.17
252382--252406	11	2.3	11	100	0	50	32	16	16	36	1.90
254590--254625	2	18.0	2	100	0	72	50	0	0	50	1.00
257898--257938	11	4.0	11	81	18	61	46	0	0	53	1.00
258198--258242	17	2.6	17	80	13	56	48	0	0	51	1.00
259416--259493	12	6.2	12	72	21	54	48	0	1	50	1.09
259504--259539	17	2.1	17	89	0	54	27	0	0	72	0.85
259509--259571	22	2.9	22	83	4	74	30	1	0	68	0.99
259535--259601	30	2.2	31	77	17	77	35	4	0	59	1.18
260208--260257	16	3.1	16	83	8	57	36	6	2	56	1.36
262222--262283	28	2.2	28	81	13	74	62	3	0	33	1.11
262239--262278	18	2.2	19	90	4	64	62	2	0	35	1.09
262272--262332	22	2.9	21	78	9	70	49	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
262243--262348	18	5.8	18	71	19	62	54	0	0	44	1.06
262256--262343	44	2.0	45	82	10	110	53	1	0	45	1.07
266673--266710	3	12.7	3	94	0	67	31	2	0	65	1.06
267079--267127	20	2.3	21	82	10	64	61	0	8	30	1.25
268594--268655	26	2.2	29	88	11	94	58	0	0	41	0.98
270372--270410	17	2.3	16	86	8	51	28	5	2	64	1.28
270544--270568	2	12.5	2	100	0	50	52	0	0	48	1.00
271320--271348	2	14.5	2	100	0	58	51	0	0	48	1.00
271450--271579	65	2.0	65	100	0	260	33	23	13	29	1.93
272563--272606	20	2.3	20	85	11	58	40	0	2	56	1.11
272981--273019	3	13.0	3	100	0	78	66	0	0	33	0.92
273889--273918	2	15.0	2	100	0	60	50	0	0	50	1.00
276132--276158	2	13.5	2	100	0	54	51	0	0	48	1.00
279134--279341	79	2.6	79	81	3	231	29	16	28	25	1.97
279293--279364	28	2.6	27	89	8	101	25	19	33	22	1.97
281605--282236	55	11.4	55	89	5	920	22	20	28	28	1.98
281763--281847	26	3.2	26	66	21	66	21	20	31	27	1.97
281677--281822	29	5.2	29	61	21	87	21	19	30	28	1.97
282041--282181	27	5.1	27	59	16	65	24	19	27	28	1.98
281605--282237	279	2.3	278	88	5	955	22	20	28	28	1.98
283213--283251	18	2.2	18	86	13	55	0	7	7	84	0.77
283211--283253	22	2.0	21	86	13	61	0	9	6	83	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
295658--295864	79	2.6	79	83	3	238	28	16	29	24	1.96
295816--295887	28	2.6	28	88	0	99	23	19	34	22	1.96
295737--295941	107	1.9	107	82	5	252	29	15	28	26	1.96

Tables:   1   2

The End!