genome.fa.s449.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold449
Parameters: 2 7 7 80 10 50 1000
Length:  551709

Tables:   1   2   3   

This is table  2  of  3  ( 359 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
181347--181509	42	3.8	42	77	12	145	42	15	23	17	1.88
181515--181688	61	2.9	61	80	3	181	32	20	21	24	1.98
181728--181845	62	1.9	61	85	1	164	28	22	26	22	1.99
181642--182015	156	2.4	155	84	3	472	28	19	25	26	1.99
181785--181955	94	1.8	94	88	2	263	28	18	25	28	1.98
181874--183139	62	21.6	60	79	10	1086	29	19	25	25	1.99
181879--183139	122	10.8	121	80	9	1050	29	19	25	25	1.99
182331--183139	183	4.5	175	84	7	774	29	19	26	23	1.98
185071--185109	13	3.0	13	96	0	69	33	12	15	38	1.85
186999--187041	21	2.0	22	86	9	61	39	4	16	39	1.69
187608--187639	13	2.5	13	94	0	55	31	15	12	40	1.85
187623--187679	19	2.9	19	84	2	78	31	19	15	33	1.93
190043--190074	16	2.0	16	93	0	55	18	0	3	78	0.89
191012--191097	31	2.8	31	87	0	118	31	18	32	17	1.94
191652--191741	31	2.9	31	93	0	144	20	27	17	34	1.95
191676--191731	19	3.3	19	63	31	54	17	25	19	37	1.94
195060--195289	79	2.9	78	72	8	205	34	11	22	30	1.90
195092--195387	79	3.7	79	73	5	240	34	10	23	31	1.89
195244--195499	130	2.0	130	81	1	307	33	10	25	30	1.89
197805--197896	30	3.4	30	68	27	96	40	15	18	26	1.90
197784--197918	50	2.7	50	89	0	198	41	12	17	28	1.86
205294--205344	19	2.6	19	87	6	66	13	17	1	66	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
207440--207496	18	3.0	18	79	7	51	33	5	1	59	1.30
208768--208800	13	2.3	15	90	10	52	42	0	0	57	0.98
208743--208908	50	3.1	50	65	18	127	36	4	3	54	1.39
208691--208911	110	2.0	110	97	0	415	37	5	4	52	1.45
208878--208910	13	2.3	15	90	10	52	42	0	0	57	0.98
208889--208947	24	2.6	22	78	17	66	37	0	0	62	0.95
213706--213745	18	2.3	17	91	4	62	55	2	0	42	1.13
219250--219289	18	2.3	17	91	4	62	55	2	0	42	1.13
224141--224181	20	2.2	20	86	8	59	41	24	4	29	1.75
227013--227043	5	6.2	5	100	0	62	41	38	19	0	1.51
231391--231425	18	1.9	18	94	0	61	25	0	2	71	1.00
234945--235024	40	2.0	40	97	0	151	43	10	8	37	1.69
235936--235988	20	2.6	21	87	3	72	37	11	18	32	1.87
237226--237370	20	6.7	20	73	16	110	33	14	8	43	1.77
238229--238269	21	2.0	22	85	9	59	21	19	9	48	1.77
245514--245626	40	2.8	42	82	4	142	35	13	23	28	1.92
252306--252358	21	2.4	23	81	6	65	50	0	0	49	1.00
252931--252985	21	2.6	21	82	0	74	38	23	3	34	1.73
256007--256062	21	2.7	20	83	8	76	41	19	3	35	1.69
256510--256589	28	2.7	27	79	12	70	38	1	5	55	1.30
256557--256627	33	2.2	33	82	10	83	49	0	0	50	1.00
256747--256805	25	2.3	26	82	8	68	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
256849--256893	21	2.1	21	84	15	58	51	2	4	42	1.34
257328--257398	30	2.4	30	95	0	124	23	25	8	42	1.82
259417--259457	21	2.0	21	85	4	57	21	34	9	34	1.87
271302--271348	20	2.5	20	82	6	62	63	4	0	31	1.13
278184--278216	17	1.9	17	100	0	66	30	3	0	66	1.06
281176--281215	19	2.2	19	86	4	55	0	20	2	77	0.88
281440--281695	90	2.8	90	87	2	381	32	23	10	34	1.88
286773--286821	21	2.3	21	92	0	80	38	18	20	22	1.93
287528--287574	24	2.0	24	86	0	67	55	0	0	44	0.99
288095--288137	11	3.6	11	77	17	50	44	0	0	55	0.99
288087--288136	25	2.1	25	89	10	79	44	0	0	56	0.99
288082--288131	22	2.4	22	80	12	61	42	2	0	56	1.11
289624--289712	47	1.9	46	84	13	121	51	3	1	43	1.25
290107--290148	20	2.0	21	90	4	68	52	0	0	47	1.00
290948--290977	14	2.1	14	93	0	51	20	3	0	76	0.92
291381--291459	29	2.7	29	86	2	104	32	10	5	51	1.57
294447--294481	17	2.1	17	89	10	54	2	17	0	80	0.84
294447--294481	16	2.1	17	89	5	54	2	17	0	80	0.84
295052--295084	2	17.0	2	93	6	59	51	0	0	48	1.00
298580--298632	20	2.7	20	81	0	70	35	5	47	11	1.63
305069--305106	14	2.7	14	88	8	51	7	0	21	71	1.11
305270--305511	118	2.1	118	94	0	421	35	5	15	43	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
307823--307877	20	2.8	19	88	5	74	41	16	12	29	1.85
307930--307954	13	1.9	13	100	0	50	36	16	16	32	1.90
309686--309718	17	2.0	17	88	5	50	60	12	27	0	1.32
312021--312051	15	2.1	15	93	0	53	48	16	22	12	1.80
314131--314169	13	3.0	13	96	0	69	30	17	15	35	1.91
314290--314335	21	2.2	20	81	11	58	32	19	4	43	1.71
315953--315977	13	1.9	13	100	0	50	36	16	16	32	1.90
316042--316066	13	1.9	13	100	0	50	32	16	16	36	1.90
316075--316195	52	2.3	52	94	0	206	35	17	17	29	1.93
320210--320264	20	2.8	19	88	5	74	41	16	12	29	1.85
320335--320360	13	2.0	13	100	0	52	38	15	15	30	1.88
322191--322225	17	2.0	17	88	5	52	42	2	0	54	1.15
322594--323073	155	3.1	152	77	5	453	38	21	16	23	1.92
322713--323174	154	3.0	154	78	3	378	38	19	17	24	1.93
325466--325711	129	1.9	129	89	3	388	54	4	5	36	1.43
326283--326321	15	2.7	14	80	7	51	58	2	2	35	1.25
327152--327180	6	4.8	6	100	0	58	13	0	0	86	0.58
327901--327950	2	25.5	2	83	4	66	46	2	0	52	1.12
327901--327947	19	2.5	19	86	3	60	44	2	0	53	1.12
328795--328819	13	1.9	13	100	0	50	0	0	12	88	0.53
328842--328872	15	2.0	16	93	6	55	12	3	0	83	0.75
331186--331225	19	2.2	19	90	4	64	80	10	2	7	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
331800--331852	13	4.5	13	73	26	64	32	13	16	37	1.88
331784--331852	33	2.1	33	91	5	113	30	13	18	37	1.89
340684--340736	13	4.5	13	71	26	55	32	15	16	35	1.90
340672--340737	33	2.0	33	91	5	107	31	16	18	33	1.93
341988--342026	17	2.4	16	86	4	51	66	0	7	25	1.18
342839--342880	21	2.0	21	86	9	59	40	2	0	57	1.12
342934--343019	47	1.9	44	86	11	122	32	1	5	60	1.28
344758--344803	21	2.2	21	84	3	58	63	6	2	28	1.31
347372--347453	31	2.6	33	74	18	84	57	0	0	42	0.98
352497--352526	2	15.0	2	100	0	60	50	0	0	50	1.00
353363--353457	50	1.9	50	88	0	145	43	14	11	30	1.81
358939--359000	3	20.7	3	96	0	115	64	0	1	33	1.03
364986--365151	85	2.0	85	95	0	296	34	16	17	31	1.92
367418--367448	2	15.5	2	100	0	62	48	0	0	51	1.00
367636--367759	60	2.1	60	93	0	212	25	16	17	39	1.91
377284--377311	4	7.0	4	100	0	56	0	75	0	25	0.81
378595--378627	2	16.5	2	100	0	66	48	0	51	0	1.00
383615--383649	2	17.5	2	100	0	70	51	0	0	48	1.00
383987--384032	20	2.4	20	85	7	60	2	34	2	60	1.21
384725--384758	16	2.1	17	88	5	52	14	5	2	76	1.09
385288--386468	28	41.5	28	79	7	1113	24	16	28	30	1.97
385288--386406	286	3.9	282	82	6	1260	24	16	28	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
386460--386677	28	7.7	28	77	11	167	33	11	28	25	1.92
386460--386677	57	3.8	58	83	7	252	33	11	28	25	1.92
386458--386695	85	2.8	85	79	8	218	33	12	28	26	1.92
394503--394549	3	15.7	3	82	8	60	0	31	0	68	0.90
394505--394551	20	2.4	19	89	10	76	0	34	0	65	0.93
394502--394551	23	2.2	23	89	7	75	0	32	0	68	0.90
395916--395953	2	19.0	2	100	0	76	50	0	0	50	1.00
397148--397194	24	2.0	24	83	8	60	44	2	0	53	1.12
402638--402680	22	2.0	22	86	9	61	48	2	0	48	1.14
403189--403231	23	1.9	23	90	4	70	62	0	0	37	0.95

Tables:   1   2   3