genome.fa.s458.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold458
Parameters: 2 7 7 80 10 50 1000
Length:  516756

Tables:   1   2   3   

This is table  1  of  3  ( 307 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15538--15604	1	67.0	1	77	0	62	88	10	1	0	0.59
15538--15604	7	10.3	7	84	9	81	88	10	1	0	0.59
15538--15604	20	3.4	19	86	13	91	88	10	1	0	0.59
15539--15605	26	2.6	27	83	4	93	86	10	2	0	0.67
16689--17734	55	18.5	54	82	8	1072	26	27	20	24	1.99
16586--16764	94	1.8	97	87	9	267	25	29	20	25	1.99
16770--16851	27	3.0	27	65	10	76	28	21	20	29	1.98
18539--18563	13	1.9	13	100	0	50	36	16	16	32	1.90
18518--18590	32	2.3	32	90	0	110	34	13	17	34	1.90
20043--20107	33	2.0	33	87	0	94	43	13	15	27	1.85
20151--20207	13	3.9	13	76	24	60	33	17	14	35	1.90
20132--20226	32	3.0	32	98	0	181	33	18	13	33	1.90
20129--20246	19	6.8	19	76	21	134	35	17	12	33	1.88
20283--20332	21	2.4	21	100	0	100	36	22	12	30	1.90
27670--27698	13	2.2	13	100	0	58	27	13	17	41	1.87
27818--27864	22	2.2	22	85	14	64	31	21	0	46	1.51
30235--30261	13	2.1	13	100	0	54	29	14	14	40	1.86
30216--30280	32	2.0	32	90	3	103	27	16	13	41	1.87
30246--30320	19	3.9	19	94	1	123	29	16	17	37	1.91
30349--30411	33	1.9	33	87	6	92	34	12	15	36	1.86
31390--32470	27	39.4	27	85	2	1295	25	32	13	28	1.94
32210--33225	28	35.2	28	82	7	760	29	30	16	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32458--33144	58	11.6	63	81	10	386	30	30	17	21	1.96
32448--33225	144	5.3	143	81	9	806	30	30	17	21	1.96
32466--33256	86	9.1	83	82	8	600	30	30	17	21	1.96
33201--33250	25	2.0	25	92	0	82	34	28	20	18	1.95
34139--34213	20	3.8	20	81	0	96	30	16	12	41	1.84
41715--41756	21	2.0	21	90	0	66	59	2	0	38	1.10
41816--41878	33	1.9	33	83	0	81	50	9	3	36	1.51
43243--43299	30	1.9	30	82	7	71	42	1	0	56	1.10
43918--43963	14	3.3	15	82	11	53	58	2	0	39	1.10
44640--44687	22	2.1	24	84	7	64	37	2	4	56	1.30
44656--44704	14	3.7	13	81	10	55	40	2	0	57	1.10
48493--48523	11	2.7	11	95	5	53	87	0	12	0	0.55
48493--48559	12	5.3	12	76	13	64	77	0	19	2	0.89
48496--48555	16	3.9	16	86	6	72	75	0	21	3	0.95
49357--49548	57	3.4	57	81	7	158	30	13	10	46	1.76
49439--49548	29	3.9	28	73	16	75	31	13	9	45	1.75
51860--51908	24	2.1	23	85	11	64	28	2	4	65	1.22
52324--52370	16	2.8	18	78	15	55	57	0	0	42	0.98
53340--53376	2	20.0	2	84	15	53	45	0	0	54	1.00
53698--53724	2	13.5	2	100	0	54	48	0	0	51	1.00
54854--54885	2	16.0	2	100	0	64	50	0	0	50	1.00
56442--56493	18	2.9	18	75	11	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57614--57671	22	2.7	21	86	7	73	72	0	25	1	0.94
57694--57751	27	2.1	28	90	3	91	17	12	12	58	1.63
58762--58787	2	13.0	2	100	0	52	50	0	0	50	1.00
58809--58843	6	5.7	6	86	6	52	62	0	0	37	0.95
58935--58994	24	2.5	24	75	5	59	21	3	3	71	1.15
65747--65812	22	2.9	22	80	12	71	56	0	0	43	0.99
66132--66168	2	18.5	2	100	0	74	51	0	0	48	1.00
66458--66497	19	2.1	19	86	9	55	47	0	0	52	1.00
67835--67912	34	2.3	35	86	4	106	43	0	5	51	1.24
67856--67928	35	2.2	33	87	9	103	36	0	6	56	1.26
67857--67921	17	3.8	17	73	17	62	36	0	6	56	1.24
68727--68786	2	30.0	2	100	0	120	50	0	0	50	1.00
70614--70653	17	2.4	17	82	0	53	45	0	7	47	1.31
71682--71712	2	15.5	2	100	0	62	48	0	0	51	1.00
71879--71911	13	2.4	14	90	10	50	51	0	0	48	1.00
74726--74766	16	2.6	16	84	0	55	2	7	31	58	1.38
75790--75846	26	2.2	27	84	6	73	38	0	7	54	1.28
75789--75858	26	2.7	25	73	6	59	38	1	5	54	1.33
76762--76800	2	19.5	2	94	0	69	46	0	2	51	1.14
77422--77492	29	2.5	28	75	11	72	33	2	2	60	1.26
77465--77524	17	3.4	16	78	21	50	38	0	3	58	1.15
83059--83094	2	18.0	2	100	0	72	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85290--85349	28	2.1	28	81	3	66	41	5	1	51	1.33
85618--85664	10	4.8	10	75	15	53	31	4	0	63	1.13
85590--85633	18	2.3	18	80	7	52	36	0	0	63	0.95
89628--89675	22	2.2	21	85	3	60	64	0	2	33	1.05
93275--93304	3	10.0	3	100	0	60	33	0	0	66	0.92
93522--93551	14	2.1	14	93	0	51	43	0	0	56	0.99
93971--94031	32	2.0	31	83	6	79	14	18	22	44	1.86
94183--94220	20	1.9	19	89	5	58	44	2	0	52	1.14
94192--94244	18	2.9	18	83	13	65	43	1	1	52	1.23
94337--94377	21	2.0	20	86	9	57	26	0	0	73	0.84
94337--94377	10	4.1	10	87	9	57	26	0	0	73	0.84
95160--95203	22	2.0	22	100	0	88	36	4	9	50	1.55
101537--101566	2	15.0	2	92	0	51	50	3	0	46	1.18
101540--101574	10	3.5	10	92	0	52	51	5	2	40	1.40
101915--101974	13	3.9	16	72	20	56	36	0	0	63	0.95
102304--102335	2	16.0	2	93	0	55	46	0	0	53	1.00
104623--104650	2	14.0	2	100	0	56	50	0	0	50	1.00
105267--105330	30	2.1	32	85	5	87	56	3	1	39	1.25
105404--105440	3	12.3	3	100	0	74	67	0	0	32	0.91
105571--105625	20	2.9	19	78	19	62	47	3	1	47	1.30
107700--107726	2	13.5	2	100	0	54	51	0	0	48	1.00
108397--108438	22	2.0	21	85	4	57	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108531--108563	17	1.9	17	88	11	50	72	0	0	27	0.85
108642--108700	20	3.2	18	72	13	57	49	3	5	42	1.41
112538--112580	21	2.0	21	100	0	86	27	13	13	44	1.83
113822--113916	40	2.3	41	80	3	111	31	16	8	43	1.78
117617--117672	20	3.1	18	73	16	53	46	3	3	46	1.37
122645--122691	25	1.9	25	82	4	60	36	6	2	55	1.37
123706--123806	40	2.5	41	80	3	105	30	16	10	41	1.83
126709--126761	20	2.9	18	73	13	54	47	3	5	43	1.45
126992--127018	14	1.9	14	100	0	54	48	14	0	37	1.45
127070--127103	17	2.0	17	94	0	59	52	38	0	8	1.33
127911--127958	19	2.6	18	81	12	53	58	2	8	31	1.39
129203--129245	21	2.0	21	100	0	86	27	13	13	44	1.83
130487--130581	40	2.3	41	80	3	111	31	16	8	43	1.78
132174--132242	14	4.9	14	75	5	59	43	0	0	56	0.99
132169--132206	20	2.0	21	85	15	55	50	0	0	50	1.00
132191--132242	15	3.7	15	70	15	56	40	0	0	59	0.97
132265--132415	75	2.0	75	90	2	241	52	12	5	29	1.61
139380--139405	2	13.0	2	100	0	52	50	0	0	50	1.00
140313--140371	20	3.2	18	72	13	57	49	3	5	42	1.41
141246--141272	2	13.5	2	100	0	54	48	0	0	51	1.00
148237--148334	50	1.9	51	82	13	123	47	3	2	46	1.29
148673--148757	42	2.0	42	93	0	143	21	14	18	45	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
149609--149687	18	4.4	18	75	10	72	45	0	3	50	1.19
149655--149705	15	3.7	15	70	20	56	45	0	0	54	0.99
149728--149877	75	2.0	75	85	6	207	51	12	6	30	1.63
150029--150079	22	2.3	23	80	10	61	47	3	0	49	1.20
155837--155913	20	3.9	19	81	8	100	42	12	12	31	1.81
156761--156904	67	2.1	67	81	5	166	26	15	26	31	1.95
156765--156902	35	4.0	35	76	11	124	26	15	26	31	1.96
156888--157184	28	10.4	28	83	5	308	25	17	27	29	1.97
156802--157184	58	6.5	57	79	7	367	26	16	26	29	1.97
156888--157184	86	3.5	85	81	5	346	25	17	27	29	1.97

Tables:   1   2   3