genome.fa.s458.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold458
Parameters: 2 7 7 80 10 50 1000
Length:  516756

Tables:   1   2   3   

This is table  3  of  3  ( 307 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
379468--379499	2	16.0	2	100	0	64	50	0	0	50	1.00
380213--380246	3	11.3	3	100	0	68	35	0	0	64	0.94
381497--381557	22	2.9	21	76	11	63	52	1	3	42	1.27
382528--382576	6	8.2	6	86	0	53	51	14	0	34	1.43
384177--384234	16	3.6	16	70	9	55	56	3	0	39	1.16
385535--385566	13	2.5	13	95	5	57	40	0	0	59	0.97
387078--387131	26	2.2	24	84	12	74	57	3	0	38	1.17
393469--393493	9	2.8	9	100	0	50	44	0	0	56	0.99
394822--394862	21	2.0	20	86	9	57	51	2	0	46	1.14
395260--395416	78	2.0	78	100	0	314	26	20	10	42	1.84
398097--398152	28	2.0	28	89	0	85	26	10	5	57	1.54
399053--399402	96	3.7	94	83	4	443	42	17	20	19	1.89
399055--399412	192	1.9	190	86	6	508	43	16	20	19	1.88
401842--401902	23	2.7	23	85	7	72	40	0	0	59	0.98
401856--401903	21	2.3	21	83	13	64	45	0	0	54	0.99
411310--411362	17	3.1	18	70	22	51	45	0	1	52	1.11
412458--412493	14	2.6	15	87	12	51	47	5	0	47	1.25
417559--417616	22	2.6	22	71	13	55	51	0	5	43	1.24
418226--418276	15	3.5	14	86	7	75	64	0	1	33	1.05
419891--419944	22	2.5	22	78	0	63	25	1	24	48	1.61
420476--420530	18	3.0	19	82	15	71	58	0	1	40	1.09
420861--420885	13	1.9	13	100	0	50	68	0	0	32	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
427842--427896	29	1.9	30	85	10	80	38	1	0	60	1.08
433874--434061	88	2.1	88	91	5	308	44	4	4	46	1.45
435737--435770	16	2.2	16	90	10	54	52	2	0	44	1.16
437235--437740	79	6.4	79	81	5	517	33	12	24	29	1.92
437236--437739	234	2.1	238	83	5	639	34	12	24	28	1.92
437674--437841	51	3.3	51	83	3	185	31	9	26	32	1.88
437780--438002	80	2.8	79	82	2	259	29	11	27	31	1.91
437715--438208	210	2.4	211	83	4	577	34	10	24	30	1.89
437936--438051	51	2.3	51	84	3	153	33	8	26	31	1.87
437855--438132	130	2.1	130	87	0	385	32	11	26	30	1.91
437543--438053	261	2.0	259	84	4	663	33	10	24	31	1.89
437988--438222	79	3.0	80	80	2	260	36	11	22	29	1.89
440597--440710	50	2.3	50	84	6	151	44	15	14	24	1.85
442194--442234	20	2.0	21	95	4	75	34	12	19	34	1.89
442264--442327	33	1.9	34	87	9	96	34	9	18	37	1.83
448460--448486	13	2.1	13	100	0	54	29	14	14	40	1.86
450341--450382	22	1.9	22	90	0	66	40	4	33	21	1.74
452741--452787	22	2.1	23	84	11	62	27	0	8	63	1.23
452882--452939	21	2.9	19	85	12	64	53	0	6	39	1.28
452901--452940	21	1.9	21	94	0	71	52	0	7	40	1.30
457884--457941	29	2.0	29	100	0	116	37	20	6	34	1.80
464405--464481	28	2.8	28	84	7	86	24	16	32	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
464498--464799	52	5.7	52	68	15	154	31	12	25	29	1.93
464617--464692	27	2.8	28	89	2	109	21	21	34	23	1.97
467160--467185	13	2.0	13	100	0	52	38	15	15	30	1.88
467139--467205	33	2.0	33	88	0	98	43	16	14	25	1.86
467225--467279	19	2.9	19	97	0	101	40	14	10	34	1.81
467315--467392	21	3.7	21	89	5	113	30	12	17	38	1.88
468227--469021	55	14.4	55	92	3	1193	20	20	30	28	1.98
468227--469021	165	4.8	165	94	2	1316	20	20	30	28	1.98
470204--471327	55	20.4	55	92	3	1706	20	20	30	28	1.98
472511--473469	55	17.4	55	92	4	1446	20	20	30	28	1.97
472511--473469	165	5.8	165	94	2	1628	20	20	30	28	1.97
474652--475611	55	17.4	55	91	4	1412	20	20	30	28	1.97
474652--475611	165	5.8	165	93	1	1592	20	20	30	28	1.97
475418--475555	27	5.0	27	60	16	68	21	19	29	28	1.98
476795--477589	55	14.4	55	92	3	1166	20	20	30	28	1.98
477172--477261	26	3.3	26	68	14	74	20	17	33	28	1.95
476795--477589	165	4.8	165	93	2	1298	20	20	30	28	1.98
477396--477533	27	5.0	27	60	16	68	21	19	29	28	1.98
479767--479842	33	2.3	33	93	0	125	15	6	40	36	1.74
501315--501348	17	2.0	17	88	0	50	32	5	11	50	1.63
506315--506390	36	2.1	36	82	2	91	43	11	2	42	1.55
507242--507283	21	2.0	20	86	13	57	45	16	0	38	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
509150--509180	14	2.2	14	94	0	53	64	0	19	16	1.29

Tables:   1   2   3

The End!