genome.fa.s461.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold461
Parameters: 2 7 7 80 10 50 1000
Length:  348331

Tables:   1   2   

This is table  2  of  2  ( 204 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
220910--220992	29	2.9	28	85	3	87	25	16	30	27	1.97
220919--220992	29	2.5	28	85	8	103	25	17	29	27	1.97
220992--221708	28	25.4	28	82	6	747	25	18	29	26	1.98
241962--242030	34	2.1	32	86	10	95	33	17	14	34	1.90
242099--242123	13	1.9	13	100	0	50	36	16	16	32	1.90
243873--243898	13	2.0	13	100	0	52	38	15	15	30	1.88
243798--244006	86	2.4	85	95	2	366	37	16	17	29	1.91
243959--243984	13	2.0	13	100	0	52	38	15	15	30	1.88
250157--250182	13	2.0	13	100	0	52	30	15	15	38	1.88
250303--250348	21	2.2	20	81	11	58	32	19	4	43	1.71
252700--252725	13	2.0	13	100	0	52	38	15	15	30	1.88
252625--252833	86	2.4	85	95	2	366	37	16	16	28	1.91
252786--252811	13	2.0	13	100	0	52	38	15	15	30	1.88
254667--254691	13	1.9	13	100	0	50	36	16	16	32	1.90
261011--261051	20	2.0	20	90	0	64	31	12	21	34	1.91
262943--263008	33	2.0	33	90	0	105	27	22	21	28	1.99
266169--266238	1	70.0	1	79	0	77	90	1	7	1	0.58
266169--266245	15	5.3	14	81	17	86	88	1	9	1	0.64
266171--266237	17	3.9	17	87	12	93	89	1	7	1	0.60
266169--266249	6	13.3	6	78	18	53	87	1	9	1	0.65
266169--266249	7	10.4	8	82	12	82	87	1	9	1	0.65
266169--266249	17	5.2	16	83	7	80	87	1	9	1	0.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
267223--267792	61	9.4	61	83	5	642	27	26	18	28	1.98
267809--267895	42	2.1	42	82	4	104	19	21	11	47	1.81
268507--268635	51	2.6	48	82	8	145	29	17	14	37	1.90
270690--271052	79	4.6	79	81	3	390	28	24	12	34	1.92
270984--271104	51	2.4	51	80	9	138	31	26	12	29	1.93
270908--271185	130	2.1	130	85	2	371	29	25	12	32	1.93
271039--271423	79	4.9	80	80	7	439	29	25	12	31	1.93
270829--271263	209	2.1	209	82	5	531	28	25	13	32	1.93
270751--271341	288	2.1	288	84	2	751	29	25	12	32	1.93
271039--271423	157	2.4	158	85	5	492	29	25	12	31	1.93
272679--272734	20	2.8	19	89	5	76	39	14	16	30	1.88
272785--272837	19	2.7	20	82	8	63	45	15	11	28	1.80
273881--273954	20	3.7	21	87	7	100	37	14	12	35	1.84
276939--276977	18	2.1	19	85	4	53	79	7	10	2	1.02
277269--277295	11	2.5	11	100	0	54	85	0	7	7	0.75
278342--278531	34	5.7	33	76	5	204	23	28	13	34	1.93
278337--278566	66	3.5	66	88	1	345	21	27	13	37	1.91
278508--278700	27	7.0	27	81	5	174	23	31	12	33	1.92
278729--278805	32	2.4	32	80	8	86	36	29	11	22	1.89
278796--279301	28	17.3	28	75	9	217	29	29	16	24	1.97
278806--279133	125	2.7	117	79	10	347	28	30	16	24	1.97
278688--279303	56	10.4	56	74	12	355	29	29	16	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
278790--279303	84	5.9	82	74	12	316	29	29	16	24	1.97
280585--280699	51	2.3	50	86	1	167	29	13	9	47	1.74
287082--287371	52	5.6	52	76	11	249	38	16	20	24	1.92
287124--287371	103	2.4	103	85	4	329	39	16	19	25	1.92
287395--287737	32	10.7	32	78	8	180	21	18	32	28	1.96
287406--287737	64	5.2	62	83	5	344	21	17	32	28	1.96
287395--287737	96	3.6	97	82	2	415	21	18	32	28	1.96
307634--307675	21	2.0	21	86	13	61	28	0	19	52	1.46
309981--310032	11	4.6	11	76	11	52	73	1	23	1	1.04
309998--310047	10	5.0	10	79	15	59	80	0	18	2	0.82
309997--310044	11	4.5	11	82	7	64	81	0	16	2	0.79
309982--310047	21	2.9	23	82	11	82	75	1	19	3	1.01
310658--310723	34	1.9	34	93	0	114	28	7	16	46	1.74
313348--313395	18	2.5	19	86	10	71	54	0	4	41	1.20
314261--314313	20	2.7	20	100	0	106	35	11	18	33	1.87
314352--314379	13	2.2	13	100	0	56	39	17	14	28	1.89
314468--314492	13	1.9	13	100	0	50	36	16	16	32	1.90
316944--316981	13	2.9	13	96	0	67	34	18	15	31	1.92
318077--318493	107	3.9	107	74	13	340	30	14	27	27	1.95
318215--318551	52	6.4	52	69	16	203	31	12	25	29	1.93
318371--318441	27	2.6	27	86	2	88	23	21	30	23	1.99
318430--318548	51	2.3	53	85	7	154	33	11	22	31	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
320925--320950	13	2.0	13	100	0	52	38	15	15	30	1.88
320904--320970	33	2.0	33	88	0	98	43	16	14	25	1.86
320991--321057	19	3.9	17	76	23	70	38	16	11	32	1.85
321012--321036	13	1.9	13	100	0	50	32	16	16	36	1.90
320993--321055	32	2.0	32	93	0	108	36	17	12	33	1.88
321761--322290	55	9.4	55	85	6	668	24	20	27	27	1.99
321807--321896	26	3.3	26	66	19	67	20	18	33	27	1.96
321833--321921	29	3.2	29	65	26	82	21	19	31	28	1.97
321760--322263	171	2.9	170	93	2	818	25	20	27	27	1.99
321761--322289	226	2.3	222	87	4	731	24	20	27	27	1.99
323252--323321	8	8.8	8	77	10	63	0	11	5	82	0.82
323268--323323	13	4.6	12	78	10	60	0	7	7	85	0.73
323267--323323	15	3.7	15	81	6	69	0	8	7	84	0.79
338750--338801	19	2.8	18	81	13	61	42	15	13	28	1.85
339043--339348	54	5.6	55	81	12	344	23	21	28	27	1.99
339043--339348	110	2.8	111	83	11	355	23	21	28	27	1.99
340412--340440	15	1.9	15	100	0	58	0	3	6	89	0.57
340395--340439	16	2.8	16	89	0	63	0	6	6	86	0.70

Tables:   1   2

The End!