genome.fa.s469.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold469
Parameters: 2 7 7 80 10 50 1000
Length:  257357

Tables:   1   2   

This is table  2  of  2  ( 193 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
145755--145827	24	3.1	24	71	9	60	32	26	6	34	1.83
145820--145862	20	2.2	20	100	0	86	39	16	9	34	1.80
152017--152083	20	3.3	21	87	6	102	41	10	17	29	1.83
160323--160443	52	2.3	52	97	0	224	28	18	18	34	1.94
160323--160463	52	2.7	51	90	4	212	30	17	18	33	1.94
160452--160489	13	2.9	13	100	0	76	36	15	15	31	1.90
160530--160587	20	3.0	20	84	2	73	46	12	10	31	1.74
168988--169053	28	2.4	28	76	18	75	62	1	1	34	1.14
171046--171505	79	5.8	78	80	3	449	34	12	25	28	1.92
171043--171503	158	2.9	157	81	4	536	34	12	24	28	1.92
171432--171539	50	2.2	50	84	12	143	38	10	24	26	1.87
177406--177608	79	2.6	79	87	1	273	29	16	29	25	1.96
177564--177639	28	2.8	27	79	15	84	21	18	36	23	1.95
177646--177746	52	1.9	53	83	2	132	33	9	25	30	1.89
180115--180139	13	1.9	13	100	0	50	36	16	16	32	1.90
180127--180168	21	2.0	21	95	0	75	26	19	9	45	1.80
180195--180287	19	5.6	18	72	27	89	36	18	11	33	1.87
180212--180268	13	3.9	13	76	24	60	33	17	14	35	1.90
180185--180289	32	3.3	32	97	0	192	35	19	11	34	1.87
182430--182777	53	6.8	51	80	6	371	23	25	17	33	1.96
182217--182728	102	5.2	102	87	6	650	23	25	17	33	1.97
182217--182680	49	9.5	49	79	9	502	23	25	18	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
183283--183389	49	2.1	52	87	5	157	24	21	18	35	1.96
183554--183610	13	3.9	13	76	24	60	35	14	17	33	1.90
183567--183629	19	3.7	18	76	24	73	33	12	17	36	1.88
183553--183637	32	2.7	32	98	0	161	32	12	17	36	1.88
183682--183706	13	1.9	13	100	0	50	32	16	16	36	1.90
183718--183843	52	2.4	52	90	0	207	34	16	19	29	1.94
192697--192877	49	3.7	49	87	1	254	32	16	26	24	1.96
192738--192914	49	3.8	43	79	13	165	32	17	25	24	1.97
192958--193437	28	16.9	28	80	11	518	20	18	31	30	1.96
192945--193436	85	5.8	86	82	8	541	19	17	30	31	1.95
192945--193442	113	4.4	114	85	6	599	19	17	31	31	1.95
194873--194930	13	4.6	12	85	10	64	0	0	13	86	0.58
194873--194928	22	2.8	20	84	12	78	0	0	14	85	0.59
202541--202573	17	1.9	17	100	0	66	48	24	18	9	1.76
208857--208882	13	2.0	13	100	0	52	30	15	15	38	1.88
216080--216127	20	2.4	20	92	0	78	39	12	18	29	1.88
216143--216197	20	2.8	20	74	0	56	40	12	12	34	1.82
216073--216268	71	2.8	71	81	0	212	40	13	16	29	1.86
216214--216289	20	3.8	20	89	0	125	40	13	13	32	1.83
217199--217253	20	2.7	21	88	2	76	47	12	14	25	1.80
217803--217913	29	3.9	28	82	4	105	58	11	7	22	1.57
224039--224088	11	4.7	10	85	7	55	80	0	16	4	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
225031--225385	144	2.5	140	80	9	405	35	7	9	47	1.65
227721--227789	34	2.1	32	86	10	95	33	14	15	36	1.89
227721--227769	13	4.2	13	70	24	54	34	16	16	32	1.91
230122--230152	8	3.8	8	95	4	53	61	25	0	12	1.32
232823--233473	68	9.9	65	78	11	510	18	34	13	33	1.90
233052--233104	27	2.0	27	92	0	88	24	39	16	18	1.91
233001--233327	100	3.4	91	79	12	309	19	35	14	30	1.92
232850--233470	102	6.3	97	77	11	563	19	33	14	32	1.91
232824--233488	34	20.2	33	77	12	410	19	34	13	32	1.91
233474--233671	32	6.1	33	91	5	305	27	37	18	17	1.93
233717--234172	43	10.1	43	81	10	518	25	26	18	29	1.98
233666--234223	92	6.0	92	93	3	890	24	26	18	30	1.98
233666--234223	181	3.0	182	91	3	886	24	26	18	30	1.98
234126--234330	52	3.9	52	81	1	221	23	24	17	35	1.95
234490--234525	10	3.6	10	88	0	54	38	38	0	22	1.54
234911--234935	13	1.9	13	100	0	50	36	16	16	32	1.90
234891--234956	32	2.0	33	88	2	98	33	12	15	39	1.84
234997--235021	13	1.9	13	100	0	50	32	16	16	36	1.90
235010--235147	52	2.7	53	85	4	174	34	15	17	33	1.91
243251--243289	17	2.3	17	95	0	69	30	0	17	51	1.46
243232--243352	48	2.5	48	83	1	152	29	12	10	47	1.75
243232--243366	48	2.8	47	76	11	139	29	11	11	46	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
243330--243897	166	3.5	164	76	13	544	30	12	7	49	1.67
243330--243877	165	3.4	163	76	13	538	30	12	7	49	1.68
244268--244314	4	11.8	4	82	8	51	76	0	23	0	0.78
244262--244313	16	3.2	16	81	5	59	78	1	19	0	0.84
244283--244318	12	2.9	13	88	12	58	75	0	25	0	0.81
245934--246328	154	2.6	153	79	7	383	24	15	20	38	1.92
255967--256567	165	3.6	164	76	7	502	50	6	10	32	1.63

Tables:   1   2

The End!