genome.fa.s473.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold473
Parameters: 2 7 7 80 10 50 1000
Length:  209205

Tables:   1   2   

This is table  2  of  2  ( 149 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
193569--193756	54	3.6	53	78	8	197	34	11	26	28	1.90
193778--193850	27	2.6	28	85	8	96	21	23	32	21	1.98
193837--193958	51	2.3	52	82	8	133	34	10	22	32	1.88
196306--196359	20	2.7	20	100	0	108	40	18	14	25	1.89
196482--196541	21	2.8	22	80	7	79	33	15	15	36	1.88
199353--199499	61	2.4	61	86	2	206	38	12	23	25	1.90
199474--199971	173	2.9	171	81	5	592	37	14	24	23	1.92
199681--199796	61	1.9	61	85	3	162	38	12	25	24	1.89
199687--199819	61	2.2	60	79	10	146	39	11	24	24	1.88
199853--200024	52	3.1	52	75	14	166	38	15	24	20	1.92
199799--200083	113	2.5	113	82	1	338	37	14	25	22	1.92
199856--200675	61	14.0	61	70	11	380	35	13	26	24	1.92
199856--200328	174	2.7	174	88	0	514	35	13	27	23	1.92
199969--200584	122	5.3	121	71	13	432	34	13	26	25	1.92
200030--200257	113	2.0	113	86	0	321	32	12	28	25	1.93
199922--200419	174	2.9	166	81	11	509	33	14	27	23	1.94
200721--200868	52	2.8	52	84	2	172	41	13	18	26	1.88
200921--200989	32	2.2	31	80	10	77	18	17	34	28	1.94
200936--201236	33	9.4	32	77	8	220	19	17	31	31	1.95
201025--201236	63	3.3	61	77	10	194	21	17	31	29	1.96
201271--201463	30	6.5	31	77	11	163	32	14	25	26	1.95
201271--201463	60	3.2	61	77	7	209	32	14	25	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
201271--201461	88	2.1	87	81	5	213	32	14	25	27	1.95
201526--201581	28	2.0	29	82	3	69	39	5	21	33	1.76
202648--202725	8	9.4	8	71	15	52	2	7	8	80	0.98
202670--202753	24	3.4	24	78	8	80	3	11	9	75	1.17
202695--202741	18	2.6	18	83	10	51	0	6	10	82	0.82
202648--202753	51	2.1	52	82	12	130	2	9	10	77	1.09
206536--206596	30	2.1	29	96	3	113	52	9	14	22	1.71

Tables:   1   2

The End!