genome.fa.s477.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold477
Parameters: 2 7 7 80 10 50 1000
Length:  400253

Tables:   1   2   3   

This is table  3  of  3  ( 352 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
260911--261049	39	3.4	40	72	16	99	57	0	7	34	1.31
260913--261049	43	3.3	42	75	10	120	58	0	6	34	1.29
262296--262338	15	2.9	15	85	0	50	27	0	9	62	1.25
262475--262622	67	2.2	66	77	14	144	36	1	1	60	1.13
262568--262644	14	4.9	15	76	19	68	31	0	1	67	0.99
262569--262620	7	6.9	7	82	10	50	30	0	0	69	0.89
262495--262614	32	3.6	32	75	16	111	35	1	0	61	1.12
263361--263393	2	16.5	2	93	0	57	0	51	0	48	1.00
266578--266615	11	3.5	11	86	10	51	15	2	0	81	0.80
267602--267652	17	3.2	17	69	25	56	56	0	0	43	0.99
271084--271152	27	2.5	27	83	6	77	24	4	23	47	1.69
271229--271274	20	2.3	20	84	0	56	10	47	4	36	1.58
273728--273773	21	2.1	22	84	4	58	30	19	30	19	1.97
275657--275727	27	2.6	27	86	6	90	23	5	23	46	1.74
277015--277048	16	2.1	16	88	0	50	32	2	14	50	1.58
282298--282322	12	2.1	12	100	0	50	8	8	24	60	1.52
282281--282334	22	2.5	22	76	11	65	5	11	25	57	1.55
282308--282349	23	1.9	21	85	9	57	4	11	23	59	1.51
282882--282943	25	2.5	25	92	5	99	19	24	11	45	1.83
283091--283266	14	12.8	13	68	15	81	42	10	21	25	1.85
283109--283266	43	3.7	42	93	2	244	43	10	21	24	1.84
283124--283253	25	5.8	24	69	24	97	42	10	21	25	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
283307--283372	15	4.5	14	75	17	62	16	3	0	80	0.84
283311--283374	13	5.1	12	80	14	67	18	3	0	78	0.89
283905--283995	43	2.1	43	82	9	107	40	21	26	10	1.87
283932--284206	42	6.5	43	76	7	260	33	17	30	17	1.94
283936--284206	83	3.2	84	86	2	366	32	18	30	18	1.94
283936--284225	84	3.5	84	85	2	341	33	17	30	18	1.94
284153--284286	66	2.0	66	100	0	268	28	17	32	20	1.96
284223--284998	42	18.4	42	73	5	553	33	17	30	19	1.95
284082--284356	150	1.8	150	84	3	374	31	18	31	18	1.95
284223--284998	84	9.2	84	82	2	795	33	17	30	19	1.95
283990--284440	234	1.9	233	84	2	591	32	17	31	18	1.95
285162--285269	44	2.5	44	87	3	155	42	11	22	24	1.85
297723--297775	23	2.3	23	83	6	63	5	11	26	56	1.56
298517--298607	14	6.8	13	69	18	55	42	9	19	27	1.83
298517--298624	23	4.9	23	73	17	95	42	10	20	26	1.84
298535--298608	14	5.2	14	79	9	87	41	9	21	27	1.84
298530--298615	9	10.2	9	67	18	51	43	10	20	25	1.84
298517--298626	43	2.5	43	72	20	118	42	10	20	26	1.84
298664--298726	4	15.2	4	82	12	74	25	1	0	73	0.93
299993--300127	20	6.7	20	68	18	73	31	14	13	40	1.85
300074--300127	20	2.7	20	91	2	81	33	16	11	38	1.84
302520--302656	43	3.3	43	75	8	104	58	0	6	34	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
302523--302660	22	6.6	21	70	12	104	57	0	7	34	1.31
303599--303627	11	2.6	11	100	0	58	68	0	0	31	0.89
303952--303978	2	13.5	2	100	0	54	0	48	0	51	1.00
305828--305921	24	3.7	26	80	9	81	22	9	20	47	1.78
310886--310960	20	3.8	19	78	7	87	41	12	13	33	1.81
310883--310960	40	2.0	39	89	2	120	41	12	12	33	1.82
311540--312582	29	35.6	29	89	3	1267	21	17	31	29	1.96
311540--312584	57	17.8	57	90	4	1223	21	17	31	29	1.96
311641--312584	372	2.5	372	91	2	1480	22	17	31	29	1.96
313821--313883	1	63.0	1	80	0	72	1	0	7	90	0.52
313820--313885	9	7.2	9	86	10	98	1	0	10	87	0.60
313810--313885	18	4.1	18	86	11	100	1	1	10	86	0.68
313797--313885	26	3.4	26	80	14	94	2	2	10	85	0.77
327861--327935	20	3.8	19	78	7	87	41	12	13	33	1.81
327858--327935	40	2.0	39	89	2	120	41	12	12	33	1.82
331096--331128	15	2.1	16	88	5	50	0	18	0	81	0.68
331526--331567	16	2.6	16	92	0	75	14	7	9	69	1.37
332225--332404	48	3.8	48	89	0	279	34	16	28	20	1.94
332474--333286	32	26.7	31	84	7	632	21	18	29	30	1.97
332527--333684	28	39.5	28	85	6	696	23	17	30	28	1.97
332521--333239	64	11.8	64	87	5	719	20	18	30	30	1.97
332477--333286	96	8.9	95	83	8	698	21	18	29	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
333316--333684	82	4.5	83	92	1	573	28	14	32	23	1.94
333253--333684	55	7.8	55	88	3	564	28	15	32	24	1.95
340999--341029	2	15.5	2	93	0	53	51	3	0	45	1.17
341399--341431	15	2.1	16	88	5	50	0	18	0	81	0.68
341823--341863	16	2.5	16	92	4	64	17	7	9	65	1.44
343040--343081	21	2.0	21	100	0	84	19	14	23	42	1.87
344739--344840	27	3.9	27	83	6	122	20	8	24	46	1.79
344773--344842	24	2.8	24	85	10	79	21	8	24	45	1.79
345729--345775	21	2.2	22	82	17	64	65	0	0	34	0.93
345736--345776	21	2.0	21	90	9	66	68	0	0	31	0.90
347555--347614	27	2.1	30	84	12	81	55	0	0	45	0.99
347624--347680	19	3.1	19	76	14	57	64	1	1	31	1.13
347624--347663	20	2.1	18	86	9	53	60	2	2	35	1.24
347724--347820	16	6.1	16	86	2	124	58	4	1	36	1.24
347726--347805	6	14.8	6	68	21	52	56	3	1	38	1.25
347724--347815	31	2.9	31	86	3	121	58	3	1	36	1.21
347727--347820	47	2.0	47	85	4	127	58	4	1	36	1.25
349302--349329	14	2.0	14	100	0	56	42	0	7	50	1.30
353087--353185	34	2.9	34	87	3	137	39	27	9	24	1.85
357621--357731	34	3.3	34	82	3	109	39	19	8	32	1.81
360970--360999	4	7.5	4	100	0	60	73	0	26	0	0.84
363568--363618	20	2.6	20	84	12	70	35	0	3	60	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
363636--363676	21	2.0	20	95	4	73	73	0	0	26	0.84
363661--363685	8	3.1	8	100	0	50	88	0	0	12	0.53
363639--363685	21	2.2	21	85	7	60	78	0	0	21	0.75
364804--364839	18	1.9	19	88	5	56	55	0	2	41	1.14
364848--365144	109	2.6	111	82	13	335	51	1	2	44	1.22
365105--365179	21	3.5	21	75	17	66	56	5	2	36	1.36
365440--365798	123	2.9	122	84	10	448	42	3	1	52	1.26
369951--370181	69	3.4	69	89	3	335	29	18	11	41	1.85
370116--370604	87	5.4	92	87	4	635	34	15	8	41	1.79
371150--371325	58	3.1	57	67	14	146	56	2	1	39	1.22
371231--371504	124	2.2	125	90	3	439	52	1	2	42	1.27
371731--371809	23	3.4	23	75	18	74	29	1	6	63	1.27
371827--371898	32	2.3	31	86	11	94	43	2	0	54	1.15
371780--372057	108	2.4	114	84	10	349	41	2	2	53	1.26
372813--372846	17	2.1	17	89	10	54	61	0	0	38	0.96
372891--372926	18	1.9	19	88	5	56	58	0	0	41	0.98
375755--375800	20	2.3	20	84	0	56	36	4	45	13	1.63
380326--380371	20	2.3	20	84	0	56	36	4	45	13	1.63
380449--380518	27	2.5	28	86	9	99	45	24	5	24	1.74
386402--386447	21	2.1	22	84	4	58	28	19	30	21	1.98
388333--388405	27	2.7	27	82	0	83	27	4	20	47	1.68
388486--388512	13	2.1	13	100	0	54	22	40	7	29	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
389237--389280	21	2.1	21	91	4	72	68	0	0	31	0.90
392356--392397	2	21.0	2	100	0	84	50	0	0	50	1.00

Tables:   1   2   3

The End!