genome.fa.s486.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold486
Parameters: 2 7 7 80 10 50 1000
Length:  208893

Tables:   1   2   

This is table  1  of  2  ( 155 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3550--3579	11	2.7	11	100	0	60	53	0	20	26	1.46
7166--7234	20	3.3	20	68	18	52	44	0	0	55	0.99
7340--7387	22	2.3	20	82	10	60	43	4	0	52	1.20
7350--7396	22	2.1	22	85	14	62	42	2	2	53	1.25
7677--7731	17	3.4	16	80	14	60	50	0	0	49	1.00
7819--7866	23	2.1	23	84	0	60	41	2	0	56	1.11
8187--8211	5	5.0	5	100	0	50	20	0	0	80	0.72
8325--8418	24	3.8	23	69	13	71	54	1	2	42	1.19
9066--9115	20	2.5	21	83	6	59	60	0	0	40	0.97
9088--9184	37	2.8	33	74	21	92	53	0	3	43	1.16
9051--9184	70	1.9	68	82	15	168	55	0	2	41	1.17
9105--9153	20	2.5	20	80	3	55	59	0	4	36	1.17
9129--9189	19	3.3	18	75	6	59	55	0	1	42	1.09
9489--9524	17	2.2	16	90	5	54	50	0	0	50	1.00
9489--9537	17	2.9	16	79	8	53	44	2	0	53	1.12
11159--11239	34	2.4	34	87	2	110	37	11	11	40	1.76
12353--12404	17	3.2	16	78	10	61	46	7	0	46	1.31
18688--18740	22	2.5	22	77	14	58	43	1	3	50	1.30
19104--19163	28	2.1	28	84	0	75	53	0	0	46	1.00
22190--22245	28	2.0	28	100	0	112	39	17	7	35	1.78
22354--22391	3	12.7	3	100	0	76	31	0	34	34	1.58
22707--22752	17	2.8	17	83	3	58	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23271--23318	3	16.0	3	91	0	78	31	2	2	64	1.16
23443--23476	3	11.3	3	93	0	59	32	0	2	64	1.08
31143--31204	31	2.1	29	84	6	79	22	11	35	30	1.89
36108--36158	22	2.4	21	81	15	61	52	0	0	47	1.00
36110--36177	29	2.5	26	79	15	66	51	0	0	48	1.00
36104--36178	20	4.0	20	69	23	56	53	0	0	46	1.00
36170--36207	17	2.2	18	90	4	60	42	0	0	57	0.98
37572--37628	23	2.5	23	91	0	96	24	3	7	64	1.34
37842--38019	86	2.1	87	91	2	288	34	3	8	53	1.50
39338--39375	17	2.2	18	85	4	51	55	7	0	36	1.29
40919--40960	20	2.0	21	90	4	68	45	0	0	54	0.99
40919--40966	20	2.2	20	85	10	60	47	0	0	52	1.00
43800--43877	24	3.3	24	79	15	74	44	0	0	55	0.99
51290--51327	16	2.4	16	82	8	51	86	0	2	10	0.66
52209--52261	21	2.5	21	84	6	63	47	0	5	47	1.26
60097--60122	2	13.0	2	100	0	52	50	0	0	50	1.00
62227--62265	2	19.5	2	100	0	78	51	0	0	48	1.00
62795--62847	12	4.2	12	79	9	61	24	1	5	67	1.22
62790--62847	18	3.2	18	73	23	50	22	1	6	68	1.22
63513--63580	36	1.9	35	88	5	102	54	0	2	42	1.15
63637--63665	13	2.1	14	93	6	51	37	0	0	62	0.96
63658--63748	43	2.0	47	83	8	118	52	3	1	42	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63691--63765	21	3.2	23	77	12	73	53	2	1	42	1.23
63731--63774	14	3.1	14	78	12	54	50	2	0	47	1.13
63682--63774	9	10.0	9	69	19	57	52	3	1	43	1.24
64932--64967	2	18.0	2	100	0	72	50	0	0	50	1.00
72469--72500	2	16.0	2	100	0	64	50	0	0	50	1.00
74912--74974	23	2.9	21	72	11	54	34	0	6	58	1.23
78140--78176	9	4.3	9	83	10	51	70	0	0	29	0.88
86706--86768	17	3.5	17	75	25	51	41	0	1	57	1.08
86698--86789	34	2.7	35	84	6	116	40	0	2	57	1.11
86719--86770	16	3.1	16	76	10	59	42	0	1	55	1.10
86721--86777	18	3.3	17	78	11	62	40	0	1	57	1.09
86739--86795	11	5.0	11	78	16	62	35	0	0	64	0.93
86893--86969	30	2.5	31	83	12	95	55	0	2	41	1.13
87056--87089	2	17.5	2	93	6	61	50	0	0	50	1.00
87255--87365	49	2.3	49	82	13	126	42	0	0	56	1.05
88623--88737	57	2.0	57	94	0	203	51	9	6	33	1.59
88834--89503	342	2.0	342	97	0	1259	27	21	17	33	1.96
89982--90022	2	20.5	2	100	0	82	48	0	0	51	1.00
90038--90086	17	3.0	16	80	11	55	34	2	0	63	1.06
90419--90461	15	2.9	15	82	3	52	48	2	2	46	1.27
90450--90500	26	1.9	27	88	4	77	54	3	0	41	1.19
90447--90489	19	2.3	18	84	8	50	53	4	0	41	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90535--90616	31	2.6	31	86	1	110	52	1	0	46	1.08
90793--90818	2	13.0	2	100	0	52	50	0	0	50	1.00
91011--91047	15	2.5	16	87	12	53	24	0	0	75	0.80
92648--92725	28	2.9	27	72	16	63	46	0	1	52	1.08
92658--92697	20	2.0	21	90	9	66	47	0	0	52	1.00
92981--93013	14	2.3	15	89	5	50	30	0	3	66	1.06
93402--93444	23	1.9	22	85	4	59	41	0	2	55	1.12
96301--96338	3	12.7	3	100	0	76	31	0	0	68	0.90
96910--96981	33	2.1	34	87	2	101	52	5	4	37	1.44
96926--96980	17	3.3	17	70	12	51	52	5	3	38	1.42
98810--98842	15	2.1	16	88	5	50	51	6	0	42	1.26
100821--100845	13	1.9	13	100	0	50	32	0	0	68	0.90
101457--101492	3	12.0	3	100	0	72	33	0	0	66	0.92
101731--101758	12	2.3	12	100	0	56	32	0	0	67	0.91
102540--102593	21	2.6	22	85	11	78	40	0	0	59	0.98
102539--102617	27	2.9	26	78	10	79	41	1	0	56	1.07
102541--102676	15	9.1	15	70	14	77	46	1	0	52	1.09
106144--106238	47	2.0	47	87	4	138	55	1	5	37	1.29
106198--106277	38	2.1	37	93	2	133	61	2	1	35	1.18
107229--107270	14	2.8	15	85	7	50	19	0	4	76	0.96
108480--108553	37	2.0	36	81	2	85	50	0	0	50	1.00
108534--108575	22	2.0	21	85	4	57	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109334--109381	23	2.1	23	88	0	69	56	0	0	43	0.99
112129--112158	3	10.0	3	100	0	60	0	33	0	66	0.92
112424--112461	2	19.0	2	94	0	67	50	2	0	47	1.15
112420--112458	12	3.2	12	96	0	69	51	5	0	43	1.24
112526--112553	2	14.0	2	100	0	56	50	0	50	0	1.00
112944--112975	15	2.1	15	94	0	55	12	9	0	78	0.97
113436--113466	14	2.1	15	94	5	55	0	9	0	90	0.46
116671--116696	10	2.6	10	100	0	52	7	0	15	76	0.99
116738--116779	17	2.5	17	92	0	66	21	16	7	54	1.65
118572--118647	37	2.1	35	90	4	116	50	3	1	44	1.29
125426--125476	20	2.4	20	87	9	66	54	0	0	45	0.99
128765--129640	437	2.0	437	97	0	1655	41	13	19	24	1.88
132629--132667	11	3.5	11	83	13	53	64	0	0	35	0.94
132748--132777	2	14.5	2	93	6	51	46	3	0	50	1.18
133442--133494	24	2.2	24	89	0	79	71	1	0	26	0.96
133454--133502	16	2.9	17	82	11	57	71	2	0	26	0.97
133456--133526	20	3.5	20	79	12	74	66	1	0	32	1.01
133729--133781	26	2.1	25	82	10	63	32	1	11	54	1.47
134264--134304	21	1.9	22	90	5	66	68	4	0	26	1.10
134469--134534	8	8.0	8	85	6	78	66	0	1	31	1.01
134466--134534	25	2.8	24	84	4	84	66	0	1	31	1.00
134930--135074	7	18.8	8	67	20	60	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
134916--135074	23	7.7	21	66	27	65	43	0	0	56	0.99
134920--135053	20	7.3	19	66	26	76	44	0	0	55	0.99
134944--135019	29	2.7	28	73	16	77	46	0	0	53	1.00
134963--135051	32	2.8	32	85	14	107	47	0	0	52	1.00
134996--135064	24	3.0	24	72	16	65	46	0	0	53	1.00
134921--135053	10	14.6	9	70	21	66	45	0	0	54	0.99
135037--135073	11	3.2	12	85	11	51	35	0	0	64	0.94
141174--141301	53	2.4	54	93	3	215	39	28	10	20	1.86
149644--149683	21	2.0	20	85	5	53	55	2	0	42	1.13
149684--149733	26	2.0	26	88	4	75	52	2	8	38	1.43

Tables:   1   2