genome.fa.s491.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold491
Parameters: 2 7 7 80 10 50 1000
Length:  232955

Tables:   1   2   

This is table  2  of  2  ( 179 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
158559--158656	19	5.8	18	69	28	81	32	12	17	37	1.87
158732--158912	52	3.5	52	96	0	335	34	18	18	27	1.95
172114--172156	11	4.1	10	82	17	52	86	6	4	2	0.79
172116--172155	20	2.0	21	90	5	64	87	5	5	2	0.73
172116--172158	13	3.2	13	86	3	59	88	4	4	2	0.70
172114--172169	17	3.5	16	78	9	60	85	8	3	1	0.78
172116--172169	13	4.2	13	83	9	58	87	7	3	1	0.74
173417--174007	28	20.6	28	85	6	629	28	29	17	23	1.97
174099--174212	45	2.5	45	92	0	183	25	22	17	34	1.96
175946--175974	10	2.7	11	94	5	51	34	13	0	51	1.42
178451--178891	167	2.7	164	84	4	530	36	11	12	39	1.78
179140--179665	155	3.4	154	75	9	469	23	15	20	39	1.92
179140--179675	154	3.5	155	76	8	439	23	15	20	39	1.91
182025--182083	28	2.1	28	96	0	109	22	18	11	47	1.81
193098--193248	52	2.9	52	91	1	248	29	16	17	36	1.92
193269--193353	19	4.7	19	79	18	101	37	17	11	32	1.86
193307--193331	13	1.9	13	100	0	50	32	16	16	36	1.90
193288--193351	32	2.0	33	96	3	121	34	18	12	34	1.89
194395--194451	20	2.9	19	87	10	80	33	15	15	35	1.90
194438--194538	43	2.3	43	96	0	184	30	24	17	26	1.97
196660--196706	24	1.9	24	82	4	58	76	2	14	6	1.08
198194--198250	21	2.7	21	97	0	105	33	10	19	36	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
198306--198373	19	3.9	19	78	21	85	35	11	14	38	1.83
198327--198351	13	1.9	13	100	0	50	36	16	16	32	1.90
198308--198370	32	2.0	32	96	0	117	34	12	15	36	1.86
198413--198438	13	2.0	13	100	0	52	30	15	15	38	1.88
198393--198459	33	2.0	33	88	0	98	25	14	16	43	1.86
201008--201151	52	2.7	54	79	9	172	31	25	10	32	1.90
200812--201147	104	3.2	103	71	14	299	29	25	12	32	1.93
201132--201208	28	2.8	28	83	0	91	23	31	19	25	1.98
200810--201200	212	1.8	212	88	3	599	28	25	13	32	1.94
202773--203025	48	5.3	48	82	3	278	20	20	17	42	1.90
203043--203286	44	5.6	43	76	13	230	20	23	14	40	1.90
203044--203315	88	3.1	88	84	5	379	20	23	14	40	1.90
206842--206897	20	2.7	21	86	5	78	28	17	14	39	1.89
206842--206915	21	3.6	20	87	3	85	29	17	13	39	1.88
207217--208100	44	20.3	44	67	15	257	20	23	15	41	1.90
207217--207704	88	5.7	88	77	8	371	20	23	14	40	1.90
207553--208005	88	5.2	85	77	12	307	20	22	15	41	1.90
207685--208100	176	2.4	176	80	4	464	20	22	15	41	1.90
207688--208093	88	4.6	87	80	7	401	20	22	15	41	1.90
209085--209325	83	2.9	83	80	8	267	42	13	26	18	1.87
209085--209355	84	3.2	83	78	9	282	43	12	25	18	1.86
209396--209494	43	2.3	43	84	7	119	39	18	19	23	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
209520--209862	44	7.8	44	72	6	203	40	14	23	21	1.90
209520--209863	88	3.9	86	74	10	268	40	14	23	21	1.90
211697--211736	9	4.1	9	82	17	53	10	2	0	87	0.63
211690--211735	21	2.2	21	92	0	74	8	2	4	84	0.83
211700--211736	11	3.5	11	79	20	51	8	2	0	89	0.58
212385--212421	19	1.9	19	94	0	65	0	13	2	83	0.74
212388--212425	9	4.2	9	83	9	51	0	10	2	86	0.66
216754--216808	14	4.2	13	80	19	62	69	1	0	29	0.99
216753--216810	25	2.3	26	80	14	68	65	1	0	32	1.03
220673--220967	156	1.9	157	85	3	416	40	21	13	25	1.89
222281--222323	22	2.0	22	81	9	52	55	16	4	23	1.59
223117--223672	153	3.6	153	79	7	488	49	8	9	32	1.65
223263--223709	151	2.9	151	81	5	447	49	9	9	31	1.67
231296--231383	43	2.0	43	84	0	113	31	18	23	26	1.97
231395--231840	32	13.9	32	81	9	423	22	18	29	29	1.98

Tables:   1   2

The End!