Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold504
Parameters: 2 7 7 80 10 50 1000
Length:  246700

Tables:   1   2   

This is table  2  of  2  ( 184 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
167678--168097
179
2.4
171
81
8
446
35
15
7
41
1.76
168054--168190
68
2.0
68
81
8
163
32
15
7
45
1.73
168125--168378
84
2.9
85
83
5
314
35
16
6
41
1.75
170906--170957
21
2.5
20
75
6
50
50
9
13
26
1.72
171120--171169
14
3.4
15
78
18
52
76
2
22
0
0.89
171117--171173
10
5.4
10
80
17
62
78
1
19
0
0.83
171249--171454
68
3.0
69
94
1
378
32
6
15
46
1.70
176703--176742
20
2.1
19
85
4
53
55
2
0
42
1.13
177595--177643
26
2.0
24
84
8
62
44
2
4
48
1.33
178252--178327
34
2.2
34
85
0
107
25
3
32
38
1.74
178292--178333
22
1.9
22
95
0
75
28
4
30
35
1.78
178723--178796
34
2.2
34
87
0
103
41
35
2
20
1.66
178838--178903
34
1.9
34
84
0
87
33
3
25
37
1.72
179851--179886
3
12.0
3
100
0
72
66
0
0
33
0.92
180829--180887
25
2.4
25
97
0
109
35
13
23
27
1.92
184739--184840
44
2.3
43
80
13
100
45
0
0
53
1.06
185662--185738
23
3.3
23
85
0
91
31
19
12
36
1.90
188939--189041
32
3.3
31
76
12
111
44
33
15
6
1.73
188960--189051
16
5.8
16
79
11
84
41
35
18
4
1.70
189028--189079
16
3.3
15
75
2
50
46
34
11
7
1.69
192854--192880
4
6.8
4
100
0
54
22
0
0
77
0.76
193294--193449
73
2.1
73
92
0
267
33
3
8
54
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
193708--193778
31
2.2
32
87
5
108
45
29
14
11
1.79
193729--193778
16
3.2
16
67
16
50
44
30
16
10
1.80
193792--193827
16
2.2
16
90
0
54
30
44
16
8
1.77
196555--196600
25
2.0
22
83
12
56
41
0
10
47
1.38
196660--196699
20
2.1
19
86
13
55
0
30
0
70
0.88
197664--197698
16
2.2
16
100
0
70
40
17
25
17
1.90
198853--198877
13
1.9
13
100
0
50
40
4
0
56
1.18
199175--199291
39
2.8
41
74
18
109
52
0
1
46
1.11
200977--201027
24
2.0
25
82
14
61
35
7
0
56
1.28
201301--201334
2
17.0
2
100
0
68
50
0
0
50
1.00
201590--201628
16
2.2
18
86
13
55
56
0
0
43
0.99
201681--201898
109
2.0
108
84
6
280
31
15
12
40
1.84
201889--201918
2
15.0
2
100
0
60
50
0
0
50
1.00
202415--202457
22
2.0
22
86
9
61
58
0
2
39
1.11
202773--202816
18
2.4
19
78
21
58
18
6
4
70
1.27
202773--202816
17
2.5
17
85
7
61
18
6
4
70
1.27
203184--203208
2
12.5
2
100
0
50
0
48
0
52
1.00
204841--204885
16
2.7
17
82
6
56
68
0
0
31
0.89
206049--206177
63
2.0
63
89
0
195
26
32
24
17
1.96
206514--206585
31
2.2
33
90
4
112
45
4
0
50
1.21
219782--219832
14
3.8
13
80
15
50
19
5
0
74
1.02
220090--220126
17
2.0
20
85
15
53
21
13
0
64
1.27
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
221596--221633
19
2.1
19
90
5
60
55
0
2
42
1.14
223047--223103
28
1.9
30
82
10
73
45
8
10
35
1.70
222653--223121
242
2.0
238
90
1
740
40
6
11
41
1.67
223714--223761
3
15.7
3
86
4
69
31
2
2
64
1.16
223856--223888
15
2.2
15
94
0
57
66
0
0
33
0.92
226537--226937
123
3.2
123
89
2
613
28
16
24
29
1.97
230068--230123
2
30.0
2
84
13
75
55
0
0
44
0.99
230068--230124
22
2.6
22
97
0
105
56
0
0
43
0.99
234300--234331
16
2.0
16
100
0
64
31
18
12
37
1.88
237949--237996
3
16.0
3
95
0
87
66
2
0
31
1.03
241732--241865
16
8.2
16
65
21
55
42
0
0
57
0.98
241763--241819
18
3.4
18
68
24
52
45
0
0
54
0.99
241776--241827
14
3.4
14
78
19
59
51
0
0
48
1.00
241824--241865
5
8.6
5
82
15
52
35
0
0
64
0.94
242109--242154
20
2.3
19
85
10
65
54
0
2
43
1.12
242170--242210
19
2.0
21
86
9
59
41
0
2
56
1.13
244866--244941
32
2.3
32
82
6
91
47
1
0
51
1.09
244910--244948
18
2.0
20
90
9
64
48
0
0
51
1.00
245289--245372
19
4.3
20
66
22
54
30
0
2
66
1.04
245288--245417
11
11.7
11
69
19
67
30
0
2
66
1.04

Tables:   1   2

The End!