genome.fa.s508.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold508
Parameters: 2 7 7 80 10 50 1000
Length:  522420

Tables:   1   2   3   

This is table  2  of  3  ( 289 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
219840--220572	279	2.6	278	88	1	1087	35	10	16	36	1.84
222942--222966	2	12.5	2	100	0	50	48	0	0	52	1.00
224172--224202	16	2.0	15	93	6	53	38	3	0	58	1.15
225377--225955	288	2.0	288	87	1	829	25	22	17	33	1.96
226686--226719	18	1.9	18	88	5	52	35	0	5	58	1.22
227523--227562	3	13.3	3	94	0	71	32	2	0	65	1.06
233814--233838	2	12.5	2	100	0	50	48	0	0	52	1.00
235044--235074	16	2.0	15	93	6	53	38	3	0	58	1.15
236250--236828	288	2.0	288	87	1	829	25	22	17	33	1.96
237559--237592	18	1.9	18	88	5	52	35	0	5	58	1.22
238396--238435	3	13.3	3	94	0	71	32	2	0	65	1.06
242650--242712	32	2.1	31	82	11	78	39	0	3	57	1.15
243234--243265	2	16.0	2	100	0	64	50	0	0	50	1.00
244136--244218	27	3.1	27	79	14	84	51	0	1	46	1.08
245881--246222	175	2.0	175	86	1	490	39	8	11	40	1.72
246594--246627	18	1.9	17	88	5	50	44	0	11	44	1.40
249346--249370	13	1.9	13	100	0	50	56	4	16	24	1.57
251283--251325	3	14.7	3	85	4	61	27	2	2	67	1.15
251286--251326	20	2.0	20	90	0	64	26	2	2	68	1.15
252548--252743	65	3.0	64	62	29	151	30	22	15	31	1.95
252549--252891	131	2.6	131	94	0	578	30	23	14	31	1.95
254048--254096	3	16.7	3	91	4	55	30	8	0	61	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
254139--254317	92	1.9	92	94	0	313	37	11	16	34	1.85
255856--256073	34	6.5	34	88	1	296	24	7	27	40	1.82
255856--256075	67	3.3	67	88	1	323	24	7	27	40	1.82
256378--256440	19	3.3	19	90	0	90	28	17	19	34	1.94
260506--260723	34	6.5	34	87	1	287	25	7	26	40	1.82
260506--260725	67	3.3	66	86	2	305	25	7	26	40	1.82
260510--260725	101	2.1	101	89	4	337	25	7	26	40	1.83
262379--262419	3	13.7	3	100	0	82	31	0	0	68	0.90
262676--262705	15	2.0	15	93	0	51	30	20	10	40	1.85
262714--262751	2	19.0	2	88	0	58	44	0	2	52	1.14
265100--265138	18	2.2	18	86	4	53	33	0	7	58	1.26
265151--266222	353	3.0	352	76	10	1023	39	10	9	40	1.73
274487--274525	18	2.2	18	100	0	78	30	20	5	43	1.73
275853--275892	20	2.0	20	90	0	62	12	45	5	37	1.64
277408--277463	28	1.9	30	86	13	82	42	0	3	53	1.18
286037--286078	6	7.0	6	88	0	57	52	2	0	45	1.13
286037--286078	4	10.5	4	84	0	57	52	2	0	45	1.13
286037--286078	10	4.2	10	90	0	57	52	2	0	45	1.13
291281--291309	3	9.7	3	100	0	58	31	0	0	68	0.89
291467--291505	3	13.7	3	84	10	55	28	0	2	69	1.02
291282--291838	183	3.0	188	83	8	699	39	7	10	41	1.68
292205--292238	18	1.9	17	88	5	50	44	0	11	44	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
295831--295882	16	3.1	17	78	16	54	59	3	0	36	1.16
296409--296441	17	1.9	17	93	0	57	54	12	6	27	1.60
307190--307223	18	1.9	18	88	5	52	35	0	5	58	1.22
307622--308096	246	2.0	241	81	8	561	43	7	11	37	1.69
308875--308909	18	2.0	18	88	5	54	31	2	11	54	1.51
309285--309752	243	1.9	243	83	9	606	45	7	12	34	1.70
310225--311204	356	2.8	353	79	10	1000	41	10	11	37	1.75
313856--313895	2	21.0	2	85	10	57	52	0	0	47	1.00
314896--314937	16	2.7	16	88	3	59	35	7	7	50	1.57
318376--318416	16	2.6	16	92	0	64	34	12	4	48	1.62
318407--318442	16	2.2	16	90	0	54	36	5	2	55	1.38
322644--322701	28	2.3	26	83	16	70	51	0	0	48	1.00
325233--325281	10	4.9	10	78	9	55	55	0	0	44	0.99
326936--326973	3	12.7	3	100	0	76	31	0	0	68	0.90
327132--327162	3	10.3	3	100	0	62	32	0	0	67	0.91
326942--327304	192	1.9	192	86	1	523	37	9	9	42	1.71
327665--327715	2	26.0	2	92	4	86	52	0	0	47	1.00
331297--331348	19	2.8	18	71	8	50	48	0	0	51	1.00
331425--331475	22	2.4	22	96	3	95	33	11	3	50	1.57
333577--333661	25	3.3	24	72	16	71	50	2	0	47	1.14
335335--335360	3	8.7	3	100	0	52	30	0	0	69	0.89
335523--335556	3	11.3	3	100	0	68	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
335335--335703	192	1.9	192	88	2	553	39	7	11	42	1.68
337199--337232	17	2.1	17	94	5	61	32	23	0	44	1.54
337403--337451	20	2.5	19	77	9	53	59	2	0	38	1.09
344043--344076	18	1.9	17	94	5	59	32	0	5	61	1.20
344194--345694	357	4.2	355	80	7	1541	42	10	8	38	1.71
344191--345535	703	1.9	708	82	6	1688	42	10	8	38	1.71
344150--345694	703	2.2	706	80	8	1672	42	10	9	38	1.71
347183--347253	27	2.6	27	84	6	90	23	7	22	46	1.76
347329--347374	20	2.3	20	84	0	56	10	47	4	36	1.58
351754--351824	27	2.6	27	88	6	99	22	7	23	46	1.76
351900--351945	20	2.3	20	84	0	56	10	47	4	36	1.58
352365--352398	18	1.9	18	88	5	52	35	0	5	58	1.22
354588--354612	2	12.5	2	100	0	50	52	0	0	48	1.00
360583--360630	23	2.0	23	84	4	60	29	22	10	37	1.88
361454--361490	14	2.4	16	82	13	51	32	5	5	56	1.45
363610--363675	16	4.1	15	76	21	62	45	0	1	53	1.09
364145--364182	17	2.2	17	86	9	51	26	0	0	73	0.83
366815--366850	17	2.2	17	90	5	56	61	0	0	38	0.96
367979--368036	26	2.3	25	91	5	91	25	15	25	32	1.95
372252--372694	220	2.0	220	99	0	877	39	19	21	20	1.93
372745--372802	26	2.3	25	91	5	91	25	15	25	32	1.95
374088--374168	40	2.0	40	81	13	96	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
378006--378035	2	15.0	2	100	0	60	50	0	0	50	1.00
378589--378636	24	2.0	24	100	0	96	54	12	16	16	1.72
378997--379034	20	1.9	20	84	10	51	21	2	5	71	1.19
379722--380454	278	2.7	276	88	2	1035	36	9	13	40	1.77
381637--381673	3	12.7	3	94	5	67	29	0	0	70	0.88
382962--383003	21	2.0	22	85	4	59	35	2	7	54	1.41
383905--383950	12	3.8	12	76	21	51	69	4	0	26	1.07
384894--385642	278	2.7	278	86	1	986	35	11	15	37	1.84
387113--387152	3	13.3	3	100	0	80	32	0	0	67	0.91
388989--389049	30	2.0	30	100	0	122	50	9	6	32	1.61
393268--393741	248	1.9	239	80	7	526	43	8	10	37	1.70
394967--395474	248	2.1	240	79	8	528	42	7	11	37	1.70
396664--397137	248	1.9	239	80	7	526	43	8	10	37	1.70
400355--400828	248	1.9	239	79	7	506	43	8	10	37	1.70
401655--401688	18	1.9	17	94	5	59	32	0	5	61	1.20
404139--404180	21	2.0	21	81	13	50	59	2	14	23	1.47
404973--405647	350	1.9	353	80	7	778	40	11	9	37	1.75
408198--408248	22	2.5	19	77	17	66	21	21	11	45	1.84
408205--408253	22	2.2	22	96	0	89	22	20	8	48	1.75
409519--409561	18	2.4	18	84	7	52	20	2	4	72	1.14
409828--409871	21	2.1	21	83	8	54	31	9	9	50	1.65
411634--411673	19	2.2	18	95	4	71	35	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
411644--411707	23	2.8	23	76	9	67	42	0	0	57	0.98
411634--411683	17	2.8	18	78	6	57	40	0	0	60	0.97
411635--411711	31	2.6	29	82	10	84	41	0	0	58	0.98
411649--411746	49	2.1	46	83	9	117	44	0	0	55	0.99
411689--411751	31	2.0	33	87	6	94	47	0	0	52	1.00
411775--411812	15	2.5	15	84	12	51	36	2	0	60	1.11
416088--416142	28	2.0	28	96	0	101	20	10	20	49	1.78
416147--416192	24	1.9	24	91	8	76	17	8	28	45	1.78
418739--418784	21	2.1	22	84	4	58	30	19	30	19	1.97
420688--420794	56	1.9	54	85	10	146	20	8	20	50	1.74

Tables:   1   2   3