Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold508
Parameters: 2 7 7 80 10 50 1000
Length:  522420

Tables:   1   2   3   

This is table  3  of  3  ( 289 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
420688--420770
28
3.0
28
92
0
139
20
9
19
50
1.75
420775--420820
24
1.9
24
91
8
76
17
8
28
45
1.78
422349--422459
39
2.9
40
78
15
119
50
0
0
49
1.00
422380--422443
12
5.2
12
73
15
51
45
0
0
54
0.99
422373--422441
27
2.6
26
76
4
66
46
0
0
53
1.00
426387--426419
2
16.5
2
93
0
57
48
3
0
48
1.17
428120--428836
279
2.6
278
82
5
855
38
10
14
37
1.79
428134--428968
276
2.9
277
80
7
896
36
10
13
39
1.79
428815--428854
18
2.2
18
100
0
80
42
7
5
45
1.54
429442--429475
18
1.9
18
88
5
52
52
0
2
44
1.16
431349--436353
358
13.9
356
78
8
4212
38
11
11
38
1.77
432904--432959
28
2.0
28
96
0
103
41
3
17
37
1.67
431349--436190
721
6.7
718
82
5
5149
38
11
11
38
1.77
440260--440298
14
2.7
15
84
8
53
33
5
2
58
1.33
442457--442502
19
2.5
19
78
3
58
43
0
0
56
0.99
443678--443717
7
5.6
7
96
3
71
42
0
0
57
0.98
445424--445472
25
2.0
25
87
0
71
44
14
8
32
1.74
449095--449136
15
2.7
15
85
7
57
52
0
0
47
1.00
451717--451768
26
2.0
26
100
0
104
23
15
11
50
1.76
460561--460611
14
3.4
15
78
15
52
76
0
21
1
0.88
460558--460613
17
3.3
17
74
0
58
78
0
19
1
0.84
466922--466967
16
3.1
15
79
20
53
71
10
13
4
1.27
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
468319--468974
27
24.0
27
89
2
970
23
33
14
28
1.94
468319--468971
191
3.4
192
92
0
1062
23
33
14
29
1.94
468957--469207
32
7.8
32
88
1
351
32
31
18
17
1.94
470435--470497
10
6.0
11
76
23
57
60
7
12
19
1.56
470452--470497
10
4.6
10
84
10
67
60
8
8
21
1.53
470675--470725
14
3.4
15
78
15
52
76
0
21
1
0.88
470672--470727
17
3.3
17
74
0
58
78
0
19
1
0.84
471098--471130
14
2.4
14
100
0
66
42
0
6
51
1.26
476171--476204
2
17.0
2
93
0
59
52
0
0
47
1.00
477731--478223
245
2.0
245
99
0
977
34
9
11
44
1.73
485505--485531
4
6.8
4
100
0
54
22
0
0
77
0.76
486194--486232
19
2.1
18
85
4
51
48
2
0
48
1.15
493030--493075
23
2.0
24
82
4
58
26
10
23
39
1.88
493918--493964
25
2.0
23
87
8
67
38
2
2
57
1.23
499006--499054
2
24.5
2
91
0
80
51
2
0
46
1.12
499354--499469
33
3.5
33
86
2
169
23
6
28
42
1.78
499772--499834
19
3.3
19
86
0
81
28
17
17
36
1.93
503900--504017
33
3.5
33
87
2
173
23
5
27
42
1.77
509383--509409
3
9.0
3
100
0
54
33
0
0
66
0.92
509423--509785
177
2.0
182
90
4
587
39
8
11
39
1.73
510130--510163
18
1.9
17
88
5
50
44
0
11
44
1.40
514688--514754
18
3.7
17
69
19
55
55
2
2
38
1.31
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
514726--514776
16
3.0
17
77
16
52
58
3
0
37
1.16
515302--515334
17
1.9
17
93
0
57
54
12
6
27
1.60
518285--518362
27
2.9
27
86
0
93
21
10
21
46
1.81
518319--518388
24
2.8
24
80
10
70
21
10
22
45
1.81
520933--520978
21
2.1
22
84
4
58
30
19
30
19
1.97

Tables:   1   2   3

The End!