genome.fa.s509.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold509
Parameters: 2 7 7 80 10 50 1000
Length:  230775

Tables:   1   2   

This is table  1  of  2  ( 167 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7294--7325	15	2.1	15	94	0	55	62	3	0	34	1.11
7296--7334	16	2.4	16	82	0	51	66	2	0	30	1.05
7406--7443	19	2.0	20	84	5	51	55	10	5	28	1.56
8664--8751	20	4.7	19	67	23	53	38	13	14	32	1.86
8798--8855	20	2.8	21	84	12	84	34	15	15	34	1.89
8778--8852	20	3.6	20	79	13	80	36	16	16	32	1.90
8776--8855	43	1.9	43	87	5	119	37	15	15	32	1.88
8871--8913	20	2.0	22	86	8	63	39	2	9	48	1.48
12584--12626	18	2.5	17	82	14	52	58	2	6	32	1.38
13896--13920	13	1.9	13	100	0	50	36	16	16	32	1.90
20249--20290	21	2.1	19	86	13	57	59	0	0	40	0.97
21163--21192	2	15.0	2	100	0	60	50	0	0	50	1.00
21384--21409	12	2.2	12	100	0	52	76	0	23	0	0.78
23250--23279	2	15.0	2	100	0	60	50	0	50	0	1.00
27221--27249	2	14.5	2	100	0	58	51	0	48	0	1.00
28380--28429	2	26.0	2	88	8	77	50	2	0	48	1.12
31229--32141	417	2.2	414	82	7	1077	32	14	11	41	1.82
32508--32561	23	2.3	23	96	0	99	33	12	20	33	1.91
36052--36116	22	3.0	22	82	4	80	29	21	10	38	1.87
37669--37707	13	3.0	13	88	0	60	38	17	15	28	1.91
37742--37787	23	2.0	23	86	0	65	36	8	28	26	1.86
37773--37833	21	2.8	22	90	5	97	39	9	22	27	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37875--38011	53	2.6	53	92	3	222	27	16	19	36	1.93
37981--38051	20	3.5	20	77	11	74	29	14	16	39	1.88
38091--38131	21	2.0	21	85	9	57	39	7	12	41	1.70
39332--39422	45	2.0	45	82	4	112	26	14	17	41	1.88
43586--43625	21	1.9	21	100	0	80	35	0	17	47	1.48
43586--43631	21	2.2	21	92	0	74	32	2	15	50	1.56
44985--45039	20	2.8	20	88	0	83	40	9	16	34	1.80
45127--45181	20	2.7	21	85	5	76	30	12	12	43	1.80
45127--45200	21	3.6	20	87	3	85	29	14	13	41	1.85
46959--46983	13	1.9	13	100	0	50	32	16	16	36	1.90
46938--47000	33	1.9	32	87	3	90	33	20	15	30	1.94
47028--47062	11	3.2	11	100	0	70	17	17	34	31	1.93
47077--47142	34	2.0	32	88	11	98	39	16	12	31	1.85
53289--53323	13	2.7	13	86	0	52	34	20	11	34	1.88
53739--53780	20	2.0	21	90	4	68	19	42	28	9	1.82
55778--55802	13	1.9	13	100	0	50	32	16	16	36	1.90
55757--55819	33	1.9	32	90	3	99	33	22	15	28	1.95
55902--55950	13	4.2	13	70	24	54	32	16	16	34	1.91
55882--55950	34	2.1	32	89	10	104	34	15	15	33	1.90
58100--58150	20	2.5	20	87	3	75	39	11	15	33	1.84
58210--58259	20	2.5	20	90	0	73	24	6	14	56	1.60
60573--60610	20	1.9	20	88	0	58	39	5	18	36	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62721--62762	15	2.8	16	82	10	61	50	2	16	30	1.58
69355--69406	19	2.7	19	87	3	77	26	15	17	40	1.89
69355--69426	20	3.7	20	83	3	83	30	12	18	38	1.87
73149--73212	33	1.9	33	87	0	92	40	7	15	35	1.76
73173--73216	20	2.1	21	95	4	81	38	9	13	38	1.77
73867--74104	49	5.0	49	73	14	185	32	14	26	26	1.95
74121--74726	28	21.4	28	76	12	458	22	17	27	32	1.96
74121--74732	57	10.8	57	82	6	611	22	16	27	32	1.96
75092--75176	37	2.3	37	95	0	152	44	14	14	27	1.83
92676--92702	2	13.5	2	100	0	54	51	0	0	48	1.00
93595--93651	21	2.7	21	97	0	105	63	5	0	31	1.17
93703--93732	14	2.1	14	93	0	51	70	16	0	13	1.18
94074--94124	26	2.0	26	85	7	70	58	0	0	41	0.98
95469--95786	91	3.4	95	82	8	260	43	7	14	34	1.74
95523--95786	91	2.9	92	86	5	363	43	7	14	33	1.75
95613--95867	91	3.0	81	77	11	253	43	8	13	34	1.74
95917--96103	92	2.0	91	81	10	211	44	6	16	32	1.74
99377--99402	13	2.0	13	100	0	52	30	15	15	38	1.88
100279--100816	49	11.1	49	78	8	501	33	17	23	25	1.96
100275--100814	149	3.7	150	76	10	438	33	17	23	25	1.96
100613--100803	48	3.9	48	83	5	213	36	17	20	25	1.95
100477--100742	136	2.0	136	85	3	365	32	18	22	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100525--100695	88	2.0	88	84	1	227	30	18	23	27	1.97
100426--100794	185	2.0	185	80	5	418	33	17	23	26	1.97
100615--100809	52	3.9	50	84	5	216	36	17	20	25	1.94
100841--101123	29	9.9	29	85	4	360	23	16	27	32	1.96
100841--101123	57	4.9	58	84	3	360	23	16	27	32	1.96
107641--107707	32	2.1	32	86	10	93	31	14	16	37	1.89
107945--107990	18	2.5	18	96	3	83	45	10	13	30	1.77
107945--107999	18	3.2	17	90	10	69	49	10	10	29	1.72
110188--110226	13	3.0	13	96	0	69	33	20	15	30	1.94
116414--116438	13	1.9	13	100	0	50	36	16	16	32	1.90
116391--116458	33	2.1	33	89	8	104	32	14	16	36	1.89
125354--125412	13	5.0	13	73	23	67	38	8	15	37	1.78
125336--125432	33	2.9	33	95	0	167	40	9	15	35	1.79
125366--125436	20	3.9	20	75	24	93	39	9	14	36	1.79
125460--125514	19	2.8	19	78	8	65	32	16	10	40	1.83
128404--128484	21	3.9	21	64	15	51	39	0	0	60	0.97
128415--128715	128	2.4	125	85	8	398	43	1	0	54	1.15
128507--128634	51	2.4	53	76	11	127	42	1	1	54	1.19
128605--128788	52	3.6	52	74	14	177	46	1	0	51	1.14
128687--128767	25	3.2	24	70	17	67	48	2	1	48	1.23
128600--128781	49	3.6	49	73	16	140	46	1	1	50	1.18
128600--128785	103	1.8	103	82	9	245	46	1	1	51	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
128941--128970	2	15.0	2	100	0	60	50	0	0	50	1.00
134704--134860	79	2.0	80	89	1	244	22	21	22	33	1.97
136091--136139	25	2.0	24	84	4	62	36	0	0	63	0.95
136994--137077	34	2.5	34	85	11	118	72	0	2	25	0.96
136999--137073	36	2.1	36	87	4	109	73	0	2	24	0.96
136994--137065	10	7.1	10	71	18	51	70	0	2	26	1.00
137096--137163	12	5.5	12	75	20	52	55	2	1	39	1.24
137129--137161	3	11.0	3	87	12	50	63	0	0	36	0.95
137198--138215	89	11.5	89	83	3	1030	38	15	15	31	1.88
141053--141143	2	51.0	2	71	22	60	56	2	0	41	1.12
141070--141143	7	10.4	7	75	18	64	59	2	0	37	1.12
141063--141144	12	7.0	12	83	9	107	58	2	0	39	1.11
142432--142467	3	11.3	3	88	11	54	0	66	0	33	0.92
142433--142466	7	5.1	7	92	7	54	0	70	0	29	0.87
148335--148379	22	2.0	22	100	0	90	33	17	17	31	1.94
151028--151053	13	2.0	13	100	0	52	30	15	15	38	1.88
151008--151071	33	2.0	33	90	3	103	26	14	17	42	1.87
154808--154885	21	3.7	21	81	6	104	46	12	7	33	1.71
154787--154887	42	2.4	42	88	1	150	44	13	7	33	1.73
156305--156410	16	6.6	16	85	0	113	8	16	37	37	1.79
156441--156484	16	2.8	16	82	0	61	11	20	22	45	1.83
156591--156655	30	2.2	29	83	8	78	36	1	1	60	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
156617--156658	19	2.2	19	87	8	59	30	0	0	69	0.89
156680--156715	18	2.0	18	100	0	72	44	0	0	55	0.99
156683--156722	18	2.2	18	90	0	62	50	2	0	47	1.14
157007--157131	60	2.1	61	80	7	139	44	14	14	27	1.84
161599--161624	13	2.0	13	100	0	52	38	15	15	30	1.88
161581--161642	20	3.6	18	73	26	53	41	14	14	29	1.85
161581--161644	33	2.0	33	93	3	112	42	15	14	28	1.86
166975--166999	13	1.9	13	100	0	50	36	16	16	32	1.90
166957--167020	33	2.0	33	87	3	94	40	14	15	29	1.86
167308--167374	37	1.9	35	88	11	102	29	25	11	32	1.92

Tables:   1   2