genome.fa.s509.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold509
Parameters: 2 7 7 80 10 50 1000
Length:  230775

Tables:   1   2   

This is table  2  of  2  ( 167 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
167740--167782	21	2.0	21	82	8	52	30	11	16	41	1.83
167812--167879	33	2.1	33	86	8	95	33	14	14	36	1.87
169792--169816	13	1.9	13	100	0	50	32	16	16	36	1.90
171163--171204	22	1.9	22	90	0	66	21	33	4	40	1.74
174436--174485	19	2.6	19	100	0	100	32	12	20	36	1.89
174515--174660	20	6.8	20	77	17	150	34	15	13	36	1.86
182310--182340	13	2.4	13	94	0	53	35	12	16	35	1.87
182289--182356	33	2.1	33	88	5	102	36	17	13	32	1.89
182386--182438	20	2.7	20	100	0	106	43	15	15	26	1.85
183543--183631	10	8.2	10	68	20	54	42	3	25	28	1.71
183544--183638	24	4.2	24	71	13	83	45	3	24	27	1.68
186273--186325	20	2.7	20	91	2	81	30	16	16	35	1.92
186375--186399	13	1.9	13	100	0	50	36	16	16	32	1.90
186355--186419	33	2.0	32	85	11	87	35	15	16	32	1.91
188140--188173	18	1.9	17	88	5	50	35	0	0	64	0.94
188500--188563	23	2.9	23	74	21	73	45	0	0	54	0.99
188464--188543	29	2.8	28	78	14	92	41	0	0	58	0.98
192469--192506	20	1.9	20	100	0	76	39	10	18	31	1.85
193491--193527	2	18.5	2	94	0	65	48	0	2	48	1.15
198024--198340	61	5.3	60	85	7	382	26	26	20	26	1.99
198323--198455	42	3.2	41	75	14	139	19	27	12	39	1.88
199074--199256	35	5.4	35	88	5	286	44	6	30	18	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
199068--199256	66	2.8	66	92	4	308	46	5	29	17	1.72
200463--200812	79	4.4	79	90	1	549	28	24	13	33	1.94
200744--200890	52	2.8	50	81	9	170	27	22	12	37	1.90
206987--207677	55	12.0	54	82	10	686	26	27	20	26	1.99
206987--207677	115	6.0	115	84	9	808	26	27	20	26	1.99
206956--207677	170	4.1	170	84	9	811	26	27	20	26	1.99
207661--207793	42	3.2	41	75	14	130	20	27	12	39	1.89
208415--208596	35	5.4	35	88	7	286	44	6	30	18	1.74
208409--208596	65	2.8	66	91	4	299	46	5	29	18	1.72
208415--208615	100	2.1	96	84	11	259	45	5	29	18	1.73
209803--210022	79	2.8	79	92	0	368	26	26	15	31	1.96
209898--210128	107	2.2	107	94	0	399	25	27	16	30	1.97
209978--210050	28	2.6	28	97	0	137	21	32	21	23	1.98
210005--210496	79	6.2	79	91	0	806	26	26	15	31	1.96
209819--210208	186	2.1	186	97	0	726	26	26	16	31	1.96
209803--210286	265	1.8	265	91	0	806	26	26	15	31	1.96
210428--210574	52	2.9	51	78	9	140	26	22	13	37	1.91
212312--212344	17	1.9	17	93	0	57	39	18	6	36	1.75
212358--212408	24	2.2	24	89	3	77	41	5	13	39	1.69
212784--212888	20	4.8	20	72	21	93	43	12	14	29	1.82
213643--213673	16	1.9	16	93	0	53	45	9	3	41	1.53
220746--220773	7	4.0	7	100	0	56	28	0	42	28	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
221652--221710	31	1.9	31	100	0	118	37	5	0	57	1.21
226443--226488	23	2.0	23	91	0	74	39	13	17	30	1.87
230542--230671	1	130.0	1	93	0	224	1	96	0	1	0.23

Tables:   1   2

The End!