genome.fa.s515.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold515
Parameters: 2 7 7 80 10 50 1000
Length:  459219

Tables:   1   2   3   4   

This is table  4  of  4  ( 410 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
413097--413149	25	2.1	25	82	3	61	50	3	0	45	1.19
413662--413704	21	2.0	21	82	8	52	41	2	0	55	1.12
417210--417256	14	3.2	16	75	25	50	57	0	0	42	0.98
417219--417256	13	2.8	14	84	15	53	57	0	0	42	0.98
423771--423848	27	3.0	25	74	22	70	33	0	1	65	1.01
423779--423863	43	2.0	43	82	13	104	34	0	1	64	1.01
423879--423936	21	2.8	21	76	21	52	37	0	0	62	0.96
423828--423934	17	6.8	16	68	21	75	42	0	0	57	0.98
424332--424382	25	2.2	24	83	16	63	60	0	3	35	1.15
424365--424416	23	2.3	23	80	16	63	61	0	0	38	0.96
424644--424678	2	17.5	2	93	0	61	0	45	2	51	1.16
424959--424985	3	9.0	3	100	0	54	0	33	0	66	0.92
425520--425805	148	1.9	147	87	2	421	27	10	30	31	1.90
430574--430635	29	2.1	29	85	11	83	46	0	1	51	1.10
430579--430663	29	2.8	30	76	18	77	48	0	1	50	1.08
434682--434728	22	2.1	22	100	0	94	61	8	8	21	1.51
435131--435202	4	18.0	4	91	0	90	50	8	0	41	1.33
435131--435201	18	3.8	18	89	7	106	50	8	0	40	1.33
444908--445027	50	2.4	48	87	10	170	45	1	4	48	1.31
446162--446247	30	2.8	31	70	19	72	48	0	0	51	1.00
446135--446220	27	3.3	27	76	15	81	44	0	0	55	0.99
446394--446456	11	5.5	12	79	12	71	66	0	1	31	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
446393--446456	27	2.2	29	86	8	87	65	0	1	32	1.02
446508--446557	20	2.5	20	86	0	64	58	0	0	42	0.98
446796--446898	30	3.1	33	80	13	122	48	0	0	51	1.00
446876--446926	19	2.6	19	81	9	59	56	1	0	41	1.10
446791--446931	11	13.9	11	68	19	76	51	0	0	48	1.05
446801--446943	67	2.1	65	79	14	148	52	0	0	46	1.05
447125--447169	10	4.4	10	83	10	56	71	0	0	28	0.87
447127--447174	12	4.0	11	80	17	51	72	0	0	27	0.84
447156--447281	30	4.2	29	72	14	87	59	0	0	39	1.03
447120--447287	8	20.1	8	65	21	53	60	0	0	38	1.01
447531--447577	20	2.4	19	85	7	58	61	0	0	38	0.96
448334--448395	25	2.7	23	73	26	60	45	1	0	53	1.10
448685--448723	19	2.1	19	85	9	53	71	5	0	23	1.05
449086--449147	25	2.5	24	79	20	74	62	0	0	37	0.95
449092--449163	30	2.4	30	79	4	74	59	0	0	40	0.97
449514--449563	19	2.9	18	72	27	54	70	0	0	30	0.88
449500--449563	33	1.9	34	87	3	94	65	0	1	32	1.02
449526--449564	15	2.7	14	88	11	53	71	0	0	28	0.86
450134--450182	20	2.5	20	74	9	55	51	0	0	48	1.00
451555--451600	24	2.0	23	83	12	58	36	2	10	50	1.50
451783--451820	18	2.1	17	90	9	58	60	0	0	39	0.97
451925--451998	6	12.3	6	87	5	96	37	0	0	62	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
451915--451998	6	13.5	6	83	7	51	38	0	0	61	0.96
451938--451998	3	20.7	3	91	3	97	34	0	0	65	0.93
452260--452309	18	2.7	19	78	9	59	66	2	0	32	1.03
452289--452336	13	3.8	12	78	13	51	64	0	0	35	0.94
453593--453631	8	4.9	8	100	0	78	87	0	0	12	0.55
457927--457977	25	2.0	25	88	0	75	45	0	1	52	1.12

Tables:   1   2   3   4

The End!