genome.fa.s543.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold543
Parameters: 2 7 7 80 10 50 1000
Length:  103261

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
675--714	21	1.9	21	85	10	55	27	5	17	50	1.67
7062--7113	19	2.6	19	81	6	59	40	11	15	32	1.83
7143--7198	20	2.8	20	89	5	78	32	14	12	41	1.83
18634--18755	1	122.0	1	76	0	91	0	8	5	86	0.72
18634--18749	32	3.6	32	97	2	216	0	7	6	86	0.72
32388--32444	1	57.0	1	78	0	60	89	8	1	0	0.55
32388--32444	17	3.4	16	90	7	87	89	8	1	0	0.55
32388--32444	18	3.1	18	87	5	78	89	8	1	0	0.55
33518--33984	55	8.4	55	88	2	634	27	27	20	24	1.99
33962--34114	42	3.6	42	78	6	182	21	28	15	34	1.94
34836--34860	13	1.9	13	100	0	50	32	16	20	32	1.94
37287--37352	27	2.4	27	87	7	89	27	33	16	22	1.96
37312--37881	79	7.2	78	85	3	676	27	25	15	32	1.95
37312--37829	236	2.2	235	84	4	682	27	25	15	32	1.95
41048--41251	79	2.6	79	81	3	214	28	16	29	24	1.97
41206--41277	28	2.6	28	86	4	92	22	19	36	22	1.95
41265--41637	51	7.1	51	72	9	234	31	11	27	30	1.92
41469--41544	27	2.8	27	90	6	109	22	21	32	23	1.98
44007--44065	13	5.0	13	70	29	60	42	15	15	27	1.86
43986--44085	33	3.0	33	94	0	164	44	16	15	25	1.85
44019--44085	20	3.7	20	74	25	85	46	14	14	23	1.83
44105--44172	19	3.9	18	76	23	83	38	14	11	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44127--44151	13	1.9	13	100	0	50	32	16	16	36	1.90
44108--44170	32	2.0	32	96	0	117	36	15	12	34	1.86
44757--44974	119	1.9	116	80	10	255	40	15	24	19	1.90
45019--45460	171	2.6	169	87	3	617	21	20	30	27	1.98
45268--45405	26	5.0	29	63	22	89	18	20	32	28	1.96
44957--45520	226	2.5	225	86	5	740	23	20	29	26	1.99
44957--45558	55	10.4	60	81	8	519	23	20	29	26	1.99
46534--46577	17	2.7	16	86	6	61	0	6	13	79	0.92
46541--46577	16	2.2	16	90	4	56	0	2	16	81	0.81
58912--58983	28	2.6	28	86	4	92	22	20	34	22	1.97
58971--59190	51	4.3	51	82	7	246	32	9	26	30	1.88
58971--59189	104	2.1	102	83	4	260	32	9	26	31	1.88
59175--59250	27	2.8	27	82	6	91	23	21	30	25	1.99
61712--61737	13	2.0	13	100	0	52	38	15	15	30	1.88
61694--61757	33	1.9	33	87	0	92	42	17	15	25	1.88
61799--61823	13	1.9	13	100	0	50	32	16	16	36	1.90
61780--61842	32	2.0	32	90	0	99	36	14	11	38	1.81
63047--63085	20	2.0	20	90	10	62	30	15	5	48	1.66
65446--65489	23	2.0	23	90	4	72	47	6	6	38	1.57
65590--65638	19	2.5	19	83	3	62	28	16	18	36	1.92
65889--65930	10	4.2	10	84	0	57	69	19	9	2	1.28
69705--69741	15	2.5	15	90	0	65	45	24	0	29	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70137--70170	2	16.5	2	87	6	50	52	2	44	0	1.16
70471--70504	16	2.2	15	89	5	50	11	11	0	76	1.02
73552--73586	16	2.2	16	89	0	52	82	5	8	2	0.91
79280--79347	34	2.0	34	91	0	109	35	13	26	25	1.92
80895--80943	23	2.1	21	82	14	53	79	2	6	12	0.99
80954--81004	12	4.6	11	74	16	52	76	0	17	5	0.98
86184--86364	59	3.1	59	82	2	220	26	13	24	34	1.93
86194--86388	59	3.3	59	79	5	160	28	14	22	34	1.93
86394--86463	36	1.9	36	82	0	86	35	12	14	37	1.84
89514--89601	44	2.0	44	86	0	122	43	10	19	27	1.83
91199--91231	15	2.1	16	88	11	50	57	3	0	39	1.14
92162--92201	16	2.5	16	88	8	55	27	10	5	57	1.52
98132--98364	118	2.0	118	93	1	396	34	15	23	26	1.95
101732--101912	90	2.0	90	91	0	290	26	24	14	33	1.95

Tables:   1

The End!