Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold547
Parameters: 2 7 7 80 10 50 1000
Length:  184368

Tables:   1   2   

This is table  2  of  2  ( 163 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
152186--152239
20
2.7
20
78
13
58
81
12
0
5
0.85
152187--152238
12
4.2
12
75
4
59
84
9
0
5
0.77
153479--154431
29
32.9
29
85
5
1180
29
30
17
23
1.97
153477--154431
57
16.5
58
85
5
1170
29
30
17
23
1.97
153479--154431
86
11.0
87
85
5
1189
29
30
17
23
1.97
154990--155064
20
3.8
20
80
0
96
33
13
12
41
1.81
154990--155067
40
2.0
39
89
2
120
33
12
12
41
1.82
158494--158536
11
3.8
11
84
3
50
79
0
18
2
0.85
158591--158655
19
3.5
19
77
10
62
40
0
1
58
1.07
158611--158668
15
4.1
15
76
10
59
31
0
1
67
1.01
158641--158681
21
2.0
21
85
4
57
31
0
0
68
0.90
159491--159536
15
3.1
15
73
14
51
78
0
15
6
0.95
159494--159534
13
3.3
13
83
6
50
82
0
14
2
0.76
159603--159636
14
2.3
15
95
5
61
11
0
11
76
1.02
159870--159914
23
2.0
23
100
0
90
17
6
17
57
1.60
160318--160371
12
4.7
12
72
22
53
81
0
18
0
0.69
160318--160371
5
10.6
5
77
18
58
81
0
18
0
0.69
160318--160371
14
3.6
14
77
18
63
81
0
18
0
0.69
160318--160371
21
2.6
22
85
8
69
81
0
18
0
0.69
160447--160493
21
2.2
22
81
11
53
31
2
2
63
1.18
164147--164231
36
2.5
34
82
14
104
30
15
24
29
1.95
165360--165432
20
3.6
20
81
3
101
35
13
19
31
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
165378--165453
21
3.7
21
80
3
100
42
11
17
28
1.84
165360--165453
41
2.3
41
98
0
179
39
12
18
29
1.88
165492--165517
13
2.0
13
100
0
52
38
15
15
30
1.88
165818--165860
22
1.9
22
81
13
52
18
16
9
55
1.67
167730--167774
21
2.1
21
84
8
56
53
4
20
22
1.63
169578--169608
15
2.1
15
93
0
53
48
16
22
12
1.80
171622--171701
20
3.8
20
75
15
79
26
15
15
43
1.85
171687--171725
13
3.0
13
88
0
60
30
15
15
38
1.88
174170--174242
20
3.6
20
81
3
101
35
13
19
31
1.91
174188--174263
21
3.7
21
80
3
100
42
11
17
28
1.84
174170--174263
41
2.3
41
98
0
179
39
12
18
29
1.88
174302--174327
13
2.0
13
100
0
52
38
15
15
30
1.88
174628--174670
22
1.9
22
81
13
52
18
16
9
55
1.67
175421--175555
20
6.6
20
76
5
126
38
12
14
34
1.84
176219--176297
22
3.5
22
73
20
74
44
0
6
49
1.28
176438--176493
25
2.2
24
78
9
58
51
0
1
46
1.11
178498--178523
12
2.2
12
100
0
52
23
15
34
26
1.94
179862--179894
16
2.1
16
88
5
50
33
30
6
30
1.82
182660--182706
18
2.4
21
73
23
57
51
0
0
48
1.00
182681--182736
9
6.0
9
78
15
51
60
0
0
39
0.97
182643--182737
8
11.8
8
70
18
54
56
0
1
42
1.06

Tables:   1   2

The End!