genome.fa.s551.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold551
Parameters: 2 7 7 80 10 50 1000
Length:  35210

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1296--2467	403	2.9	404	90	3	1793	21	37	28	12	1.90
3477--3665	103	1.9	101	89	2	297	5	42	41	10	1.62
3826--3947	64	1.9	64	91	0	199	13	22	45	18	1.83
4313--4501	103	1.9	101	89	2	297	4	42	41	10	1.60
2860--5534	836	3.2	833	90	4	3901	12	34	39	13	1.83
4662--4783	64	1.9	64	91	0	199	13	22	45	18	1.83
5122--5308	102	1.8	102	91	4	315	8	40	40	10	1.69
5219--5394	64	2.8	62	77	16	168	7	38	44	8	1.64
7330--8500	403	2.9	404	91	2	1809	21	37	28	12	1.90
9511--9699	103	1.9	101	88	4	290	4	43	41	10	1.60
9860--9981	64	1.9	64	91	0	199	13	22	45	18	1.83
10350--10535	103	1.8	101	89	2	291	4	43	41	10	1.61
8893--11568	836	3.2	832	91	4	3928	12	34	39	13	1.82
10696--10817	64	1.9	64	91	0	199	13	22	45	18	1.83
11156--11342	102	1.8	102	91	4	315	8	40	40	10	1.69
11253--11428	64	2.8	62	77	16	168	7	38	44	8	1.64
13367--14537	403	2.9	404	91	2	1809	21	37	28	12	1.90
15548--15736	103	1.9	101	88	4	290	4	43	41	10	1.60
15897--16018	64	1.9	64	91	0	199	13	22	45	18	1.83
16387--16572	103	1.8	101	89	2	291	4	43	41	10	1.61
14930--17605	836	3.2	832	91	4	3928	12	34	39	13	1.82
16733--16854	64	1.9	64	91	0	199	13	22	45	18	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17193--17379	102	1.8	102	91	4	315	8	40	40	10	1.69
17290--17465	64	2.8	62	77	16	168	7	38	44	8	1.64
19409--20580	403	2.9	404	91	3	1802	21	37	28	12	1.90
21590--21778	103	1.9	101	88	2	288	4	43	41	10	1.60
21939--22060	64	1.9	64	91	0	199	13	22	45	18	1.83
22398--22584	102	1.8	102	91	4	315	8	40	40	10	1.69
22495--22670	64	2.8	62	77	16	168	7	38	44	8	1.64
20928--22834	818	2.3	811	83	7	2321	13	34	39	12	1.83
28682--31072	403	5.8	404	71	13	1473	21	35	29	12	1.91
29895--31072	403	2.9	404	89	4	1690	21	37	28	12	1.90
32082--32270	103	1.9	101	89	2	297	4	42	41	10	1.60
32431--32552	64	1.9	64	91	0	199	13	22	45	18	1.83
33340--33528	103	1.9	101	89	2	297	5	42	41	10	1.62
33689--33810	64	1.9	64	91	0	199	13	22	45	18	1.83
34178--34366	103	1.9	101	89	2	297	4	42	41	10	1.60
34529--34650	64	1.9	64	91	0	199	13	22	45	18	1.83
34991--35177	102	1.8	102	91	4	315	8	40	40	10	1.69

Tables:   1

The End!