genome.fa.s571.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold571
Parameters: 2 7 7 80 10 50 1000
Length:  20809

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
478--502	13	1.9	13	100	0	50	36	16	16	32	1.90
2423--2507	30	2.8	31	87	3	118	24	28	17	29	1.97
2484--2957	35	14.4	34	81	12	462	21	34	12	32	1.90
2676--2732	27	2.2	26	93	3	96	22	36	14	26	1.92
2454--2932	129	3.7	132	80	12	480	21	33	13	32	1.91
2477--2957	163	2.9	162	83	9	548	20	33	12	33	1.90
2944--3133	32	6.1	32	84	11	243	28	34	17	18	1.94
2940--3134	64	3.1	64	86	10	276	27	35	17	19	1.94
3131--3556	97	4.4	98	85	7	536	23	26	19	30	1.98
3123--3556	146	3.0	142	87	7	569	23	26	19	29	1.98
3131--3556	49	8.9	49	85	7	536	23	26	19	30	1.98
4194--4226	14	2.3	15	89	5	50	84	6	9	0	0.76
5235--5292	30	1.9	31	96	3	109	24	25	20	29	1.99
5289--5750	33	14.1	32	75	18	325	20	33	12	33	1.91
5523--5579	27	2.2	26	93	3	96	22	36	14	26	1.92
5356--5750	197	2.0	194	85	10	531	20	33	13	32	1.91
5363--5750	128	2.9	128	80	14	393	20	33	13	32	1.91
5284--5710	68	6.6	66	79	14	370	21	33	13	31	1.92
5305--5758	227	2.0	230	84	10	612	20	34	12	32	1.90
5756--5939	33	5.8	33	84	8	217	28	33	19	19	1.96
5756--5939	92	1.9	99	83	9	249	28	33	19	19	1.96
5756--5947	65	3.0	64	82	10	227	27	33	18	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5944--6462	49	10.9	49	88	5	735	23	26	18	31	1.97
5944--6462	97	5.4	98	88	5	744	23	26	18	31	1.97
5944--6462	146	3.6	145	89	5	765	23	26	18	31	1.97
7101--7134	15	2.3	15	89	0	50	85	5	8	0	0.75
8143--8225	29	2.8	30	83	9	107	25	27	18	28	1.98
8202--8677	34	14.4	34	77	14	428	21	34	12	31	1.90
8196--8624	63	6.6	64	79	14	440	20	34	12	32	1.90
8399--8615	33	6.9	27	76	19	101	21	35	13	29	1.92
8202--8651	130	3.4	127	80	12	488	21	34	12	31	1.91
8663--8860	67	3.0	64	84	9	265	28	32	18	20	1.96
8663--8852	33	5.8	33	85	7	239	28	32	18	19	1.96
8857--9380	49	10.9	49	87	4	701	24	26	18	31	1.97
11043--11127	30	2.8	31	83	3	109	24	27	17	30	1.97
11086--11622	34	16.3	33	79	13	488	21	33	13	32	1.91
11076--11557	194	2.5	192	81	11	581	21	32	12	32	1.91
11103--11585	229	2.1	228	88	6	703	21	33	12	32	1.91
11595--11784	33	5.8	33	89	6	266	28	33	18	19	1.95
11789--12267	49	9.9	49	88	4	668	24	26	18	30	1.98
12871--12895	13	1.9	13	100	0	50	36	16	16	32	1.90
12851--12917	33	2.0	33	88	0	98	34	11	13	40	1.81
12962--12986	13	1.9	13	100	0	50	32	16	16	36	1.90
12995--13125	52	2.5	53	88	7	205	34	16	16	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20020--20044	13	1.9	13	100	0	50	36	16	16	32	1.90
20604--20643	21	1.9	21	90	10	64	40	25	0	35	1.56

Tables:   1

The End!