Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold606
Parameters: 2 7 7 80 10 50 1000
Length:  61466

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
442--481
19
2.1
19
100
0
80
20
25
10
45
1.81
2550--2574
13
1.9
13
100
0
50
32
16
16
36
1.90
6484--6516
14
2.4
14
100
0
66
27
0
12
60
1.32
8858--8896
13
3.0
13
88
0
60
33
17
12
35
1.88
11364--11388
13
1.9
13
100
0
50
32
16
16
36
1.90
11343--11410
33
2.1
31
86
5
91
32
19
16
32
1.93
11463--11530
33
2.1
32
89
8
102
35
14
16
33
1.89
13148--13182
11
3.4
11
88
11
56
14
0
0
85
0.59
13146--13174
6
5.0
6
91
8
51
17
0
0
82
0.66
14004--14029
13
2.0
13
100
0
52
30
15
15
38
1.88
13984--14047
32
2.0
33
90
3
103
28
14
18
39
1.90
13984--14054
19
4.0
18
72
25
62
26
12
21
39
1.89
14726--14769
21
2.1
21
83
8
54
25
29
6
38
1.81
16092--16134
20
2.1
20
82
4
50
11
30
41
16
1.83
16567--16591
13
1.9
13
100
0
50
32
16
16
36
1.90
20501--20545
22
2.1
21
84
8
56
22
15
6
55
1.63
20490--20545
21
2.7
21
75
13
62
23
14
7
55
1.63
22764--22789
13
2.0
13
100
0
52
30
15
15
38
1.88
22744--22807
32
2.0
33
90
3
103
28
14
18
39
1.90
22744--22814
19
4.0
18
72
25
62
26
12
21
39
1.89
24278--24316
16
2.4
16
86
0
60
25
23
15
35
1.94
25770--25814
20
2.1
22
88
8
67
35
0
15
48
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25772--25816
22
2.0
24
91
8
76
35
0
15
48
1.45
26653--26695
22
2.0
22
90
0
68
41
2
2
53
1.26
26945--26976
14
2.3
14
94
0
55
21
0
9
68
1.17
27908--27971
23
2.8
23
79
6
69
39
0
1
59
1.07
27906--27967
22
2.7
23
78
9
65
37
0
1
61
1.06
28324--28406
16
5.1
16
88
5
123
40
0
0
59
0.98
28574--28613
21
1.9
22
85
10
57
55
0
5
40
1.22
29644--29681
19
2.1
19
90
5
60
44
7
0
47
1.32
43398--43422
13
1.9
13
100
0
50
32
16
16
36
1.90
45381--45405
2
12.5
2
100
0
50
52
0
0
48
1.00
45252--45542
153
2.0
148
91
6
473
44
12
13
29
1.80
49083--49452
131
2.8
131
82
2
458
34
10
24
30
1.90
51792--51821
13
2.3
13
94
0
51
40
16
16
26
1.90
51803--51859
20
2.8
20
91
0
96
47
12
14
26
1.79
55499--55527
2
15.0
2
92
7
51
51
0
0
48
1.00
56914--57267
130
2.7
129
81
4
390
32
13
25
28
1.94
57074--57188
51
2.3
51
86
3
151
29
13
26
30
1.94
57125--57425
79
3.8
78
87
4
388
31
14
25
27
1.95
57361--57527
51
3.3
51
84
5
169
32
11
26
28
1.92
59814--59887
20
3.7
20
87
7
114
41
12
16
29
1.84
59919--59991
19
3.7
19
74
5
65
34
13
13
38
1.85
59938--59998
19
3.1
19
75
13
61
27
13
16
42
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60289--60982
55
12.5
55
79
14
634
25
26
21
27
1.99
60289--60982
333
2.1
331
84
9
887
25
26
21
27
1.99

Tables:   1

The End!