genome.fa.s607.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold607
Parameters: 2 7 7 80 10 50 1000
Length:  59162

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
451--1859	158	9.1	158	65	12	687	36	14	17	31	1.90
1--10234	302	33.2	301	87	5	13827	36	14	17	32	1.90
1--13056	935	14.0	921	83	7	15040	35	14	17	32	1.90
5971--7412	158	9.3	159	65	12	715	36	14	17	31	1.90
7509--8346	158	5.3	158	67	10	499	37	14	16	32	1.89
56--30994	317	96.9	314	74	11	14550	36	14	17	31	1.90
1963--2796	158	5.3	156	68	11	557	37	14	16	32	1.89
9659--10147	158	3.1	158	69	10	456	36	13	17	32	1.89
11597--12429	158	5.3	156	69	10	546	36	13	16	32	1.89
11566--12491	158	5.8	157	69	10	465	36	14	17	31	1.89
13624--14434	159	5.1	157	67	9	442	36	16	16	31	1.91
13422--14566	158	7.2	157	66	11	630	36	15	17	31	1.90
13106--30994	634	28.5	634	83	5	21096	36	14	17	31	1.90
14622--14795	86	2.0	86	96	0	321	33	17	21	27	1.96
14964--15451	159	3.1	158	68	14	424	34	15	17	31	1.92
14786--15590	158	5.1	156	69	12	618	36	14	16	32	1.89
22276--22760	158	3.1	157	67	10	394	38	14	15	31	1.88
22799--30786	159	50.6	156	66	14	2723	36	14	17	31	1.90
31954--32035	28	2.9	28	82	7	87	25	18	31	24	1.97
32018--32187	52	3.3	51	81	2	205	31	11	25	31	1.91
32171--32245	27	2.7	27	85	6	89	21	20	33	25	1.97
31963--32350	210	1.8	210	87	3	584	30	12	27	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34715--34740	13	2.0	13	100	0	52	38	15	15	30	1.88
34694--34760	33	2.0	33	85	0	89	43	14	14	26	1.85
34780--34847	19	3.9	18	76	23	83	38	14	11	35	1.83
34802--34826	13	1.9	13	100	0	50	32	16	16	36	1.90
34783--34845	32	2.0	32	96	0	117	36	15	12	34	1.86
35713--35798	26	3.2	26	66	15	75	22	18	30	29	1.97
35612--36377	55	13.3	59	82	8	811	23	20	29	26	1.99
35612--36377	176	4.4	176	82	7	880	23	20	29	26	1.99
35611--36354	237	3.2	234	85	6	979	23	20	29	26	1.99
37366--37428	11	5.6	11	76	10	65	1	3	11	84	0.81
37372--37428	17	3.5	17	80	4	73	1	1	12	84	0.79
40231--40723	159	3.1	153	67	15	374	36	13	17	32	1.89
40148--46585	317	20.3	316	87	1	7990	36	14	17	32	1.90
40164--49084	158	56.4	158	67	13	3294	35	14	17	32	1.90
46572--49097	317	8.0	317	86	3	3493	35	14	17	32	1.90
49842--49893	19	2.6	20	93	6	88	26	11	15	46	1.80
52423--52461	13	3.0	13	92	0	69	35	15	15	33	1.89
58594--58637	17	2.5	18	96	3	81	22	11	18	47	1.80

Tables:   1

The End!