genome.fa.s666.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold666
Parameters: 2 7 7 80 10 50 1000
Length:  16969

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
566--879	54	5.7	54	84	8	348	22	21	28	27	1.99
735--820	26	3.2	26	67	20	77	19	20	32	26	1.97
1501--1770	54	4.9	55	84	6	293	21	21	30	26	1.98
1562--1764	54	3.7	54	90	4	311	18	20	32	28	1.97
1657--1743	26	3.3	26	65	23	72	18	18	35	27	1.94
2431--2742	55	5.7	55	83	9	343	22	21	28	27	1.99
3462--3551	26	3.3	26	64	24	67	18	17	35	27	1.94
3384--3621	54	4.2	55	86	7	293	21	21	29	27	1.98
4173--4253	43	1.9	42	82	12	103	44	14	23	17	1.86
4246--4561	55	5.7	55	85	7	363	23	20	28	26	1.99
4404--4491	26	3.3	26	68	20	81	19	18	35	27	1.95
4428--4516	29	3.2	29	67	20	89	21	19	32	26	1.97
4264--4559	112	2.6	111	84	6	366	23	20	29	26	1.99
5200--5387	55	3.5	54	84	5	245	21	21	29	27	1.99
6061--6377	55	5.7	55	83	7	338	24	20	27	27	1.99
6246--6332	29	3.1	29	67	26	87	22	19	31	26	1.98
7002--7317	55	5.7	55	85	6	370	23	20	28	27	1.99
7163--7247	26	3.2	26	66	26	68	17	18	35	28	1.94
7136--7272	29	4.9	29	64	27	91	19	20	30	29	1.97
7930--8197	55	4.8	53	79	9	243	25	20	26	27	1.99
5180--15913	937	11.5	937	91	3	17633	28	19	26	25	1.99
7939--8137	110	1.8	110	86	4	294	23	21	27	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8820--9135	55	5.7	55	83	5	341	24	20	28	26	1.99
9001--9083	26	3.0	27	65	22	73	19	21	33	25	1.97
9758--10073	55	5.7	55	84	7	361	23	21	27	27	1.99
9892--9973	26	2.9	29	65	23	75	20	20	29	29	1.98
10692--11007	55	5.7	55	85	5	386	23	21	28	26	1.99
10851--10934	26	3.1	26	67	21	73	20	19	33	27	1.96
10692--11005	111	2.8	109	86	6	407	23	21	28	26	1.99
10828--10910	26	3.0	29	65	22	77	20	20	31	27	1.97
11631--11946	55	5.7	55	86	5	377	23	21	29	25	1.99
11789--11876	26	3.3	26	68	20	81	19	18	35	27	1.95
12567--12883	55	5.7	55	82	7	327	24	21	27	27	1.99
13662--13750	26	3.3	26	66	22	74	20	17	34	26	1.95
13504--13820	55	5.7	55	83	6	352	24	21	28	25	1.99
14442--14757	55	5.7	55	85	5	377	23	21	28	26	1.99
14600--14683	26	3.1	26	67	21	73	20	19	33	27	1.96
14576--14659	29	3.0	29	66	22	79	20	20	30	28	1.97
15379--15694	55	5.7	55	85	5	368	23	20	28	27	1.99
15513--15649	29	4.9	29	64	20	85	19	20	29	29	1.97
16084--16399	55	5.7	55	82	8	345	24	21	28	26	1.99
16084--16350	111	2.4	109	85	6	351	22	20	29	27	1.99
15205--16617	705	2.0	704	96	0	2614	29	20	25	24	1.99

Tables:   1

The End!