Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold673
Parameters: 2 7 7 80 10 50 1000
Length:  40656

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3013--3049
2
18.5
2
100
0
74
51
0
0
48
1.00
3902--3947
20
2.4
19
85
7
58
47
10
0
41
1.38
4447--4479
16
1.9
18
88
11
52
63
6
6
24
1.40
9403--9445
22
2.0
22
95
0
77
11
23
18
46
1.82
9628--9735
54
2.0
54
98
0
207
30
24
18
26
1.98
10427--10457
2
16.0
2
93
6
55
51
0
0
48
1.00
10705--10804
20
4.8
21
73
20
77
63
1
3
33
1.17
10834--10905
32
2.2
35
76
16
82
55
2
2
38
1.29
10898--10943
19
2.4
19
86
10
67
54
2
0
43
1.12
11330--11398
27
2.6
27
78
15
72
31
2
5
59
1.36
11652--11685
17
2.1
16
88
5
50
73
0
2
23
0.97
12926--12980
14
3.7
16
77
20
57
38
0
0
61
0.96
12922--12980
13
4.1
14
79
20
61
38
0
0
61
0.96
12897--12990
10
10.3
10
68
23
57
39
2
0
58
1.10
12953--12994
17
2.6
16
88
7
66
33
2
0
64
1.07
12897--12991
27
3.5
27
73
13
81
38
2
0
58
1.10
13335--13407
38
1.9
38
81
10
87
53
1
0
45
1.09
13358--13392
17
2.1
16
94
5
61
57
0
0
42
0.99
13358--13392
8
4.2
8
92
7
61
57
0
0
42
0.99
14714--14816
38
2.8
37
88
7
140
49
2
6
40
1.44
21846--21883
2
19.0
2
94
0
67
47
0
52
0
1.00
32908--32984
23
3.4
22
75
10
66
48
1
1
49
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33302--33347
17
2.8
17
87
6
60
54
0
0
45
0.99
33321--33391
19
3.2
21
75
17
56
38
0
1
60
1.06
33323--33396
22
3.5
21
69
20
57
39
0
1
59
1.06
33516--33548
2
17.0
2
87
6
50
48
0
0
51
1.00
33675--33720
2
23.5
2
95
4
85
52
0
0
47
1.00
36989--37052
27
2.4
27
100
0
128
32
12
34
20
1.90
37491--37525
3
11.7
3
100
0
70
0
31
0
68
0.90

Tables:   1

The End!