Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold682
Parameters: 2 7 7 80 10 50 1000
Length:  56334

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3--360
158
2.3
157
84
5
447
31
19
14
34
1.92
140--7577
475
15.6
474
77
9
6227
30
18
15
35
1.92
1502--2177
159
4.3
158
67
15
383
30
19
14
36
1.91
2735--2791
21
2.8
21
97
2
107
47
10
15
26
1.78
3381--7577
473
8.8
475
87
2
5744
30
19
15
35
1.92
5319--16281
159
69.2
156
64
13
777
30
19
14
35
1.92
6998--16681
159
61.1
161
64
14
831
30
19
14
35
1.92
7252--7889
317
2.0
316
90
0
988
30
18
14
36
1.91
7252--7996
317
2.3
315
84
4
881
30
18
14
35
1.91
7568--20456
476
27.1
474
86
2
17303
30
19
14
35
1.92
20174--20737
281
2.0
281
86
2
783
30
18
14
36
1.91
19701--21210
757
2.0
754
88
1
2272
30
19
14
35
1.92
20455--30815
476
21.8
474
87
2
13805
30
19
14
36
1.91
20577--30815
159
64.5
157
64
13
1115
30
19
14
35
1.91
31515--33298
476
3.8
476
88
1
2581
29
18
14
36
1.91
33299--37167
476
8.1
476
87
1
5366
30
19
15
35
1.92
31515--37167
950
6.0
952
85
3
7491
30
18
15
35
1.92
42137--42210
9
8.6
9
75
8
73
12
43
0
44
1.41
42122--42225
42
2.5
42
88
3
156
11
45
1
41
1.51
42122--42240
42
2.8
41
79
9
132
10
42
1
45
1.47
43842--49077
476
11.1
476
87
2
7057
30
18
15
35
1.92
43842--49077
948
5.5
947
87
2
7017
30
18
15
35
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44571--49807
159
33.2
159
67
12
1236
30
18
15
36
1.92
47937--49827
629
3.0
618
72
12
1757
30
17
15
36
1.91
49194--56332
476
15.2
469
83
6
6645
29
18
14
36
1.91
49869--50733
427
2.0
437
85
4
1178
30
18
13
36
1.90
50307--56332
476
12.7
475
86
2
8038
29
18
14
36
1.91

Tables:   1

The End!