genome.fa.s685.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold685
Parameters: 2 7 7 80 10 50 1000
Length:  35525

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
709--762	19	2.9	17	75	20	54	42	14	14	27	1.85
864--908	20	2.2	21	88	4	65	42	20	8	28	1.82
3225--3251	4	6.8	4	100	0	54	77	0	0	22	0.76
5342--5506	51	3.2	51	85	3	215	29	12	28	29	1.93
5489--5562	28	2.6	29	79	12	91	24	22	31	21	1.99
5442--5682	107	2.3	107	83	2	306	32	16	25	26	1.96
5599--5669	28	2.5	28	88	0	97	30	21	25	22	1.98
6761--6808	20	2.4	20	92	0	78	37	20	18	22	1.94
7985--8039	20	2.8	20	85	0	74	45	10	10	32	1.74
8054--8082	12	2.3	13	94	5	51	41	10	17	31	1.83
8065--8120	20	2.8	20	89	2	87	44	12	16	26	1.83
8310--8336	13	2.1	13	100	0	54	29	44	18	7	1.77
8745--8851	53	2.0	53	96	0	196	39	24	13	23	1.90
8938--8983	24	2.0	23	83	12	58	73	0	23	2	0.94
8936--9009	31	2.3	32	83	4	87	71	1	20	6	1.16
9414--9475	31	2.0	31	100	0	124	22	16	22	38	1.92
13792--13818	13	2.1	13	100	0	54	29	14	14	40	1.86
13773--13837	33	2.0	32	87	3	94	30	15	13	40	1.86
13802--13878	20	3.9	20	87	1	111	35	15	16	32	1.91
13923--13953	13	2.4	13	94	0	53	35	16	12	35	1.87
13907--13975	33	2.1	33	83	5	86	36	10	18	34	1.85
18867--24225	473	11.3	472	84	3	6425	36	12	19	31	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18875--24225	947	5.6	944	84	4	6616	36	12	19	31	1.90
18897--23819	158	31.1	154	64	16	474	36	12	19	31	1.90
27510--27571	22	2.9	22	81	9	67	40	4	27	27	1.76
27480--27771	72	4.1	72	84	9	427	37	8	25	29	1.85
27441--27734	141	2.1	141	100	0	588	38	8	23	29	1.84
27651--27712	22	2.9	22	81	9	67	40	4	27	27	1.76
27727--27796	20	3.4	21	81	11	83	42	2	30	24	1.69
28332--28358	13	2.1	13	100	0	54	29	14	14	40	1.86
28342--28398	19	2.9	19	81	2	78	35	14	17	33	1.90
31273--31654	165	2.3	164	80	7	398	49	8	10	31	1.68

Tables:   1

The End!