genome.fa.s690.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold690
Parameters: 2 7 7 80 10 50 1000
Length:  151548

Tables:   1   2   

This is table  2  of  2  ( 200 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74431--74509	36	2.2	36	97	0	149	49	0	0	50	1.00
75473--75535	21	3.3	19	74	19	60	38	0	0	61	0.96
75468--75537	20	3.9	18	80	14	74	40	0	0	60	0.97
75907--75937	12	2.6	12	100	0	62	48	0	6	45	1.28
76080--76130	16	3.1	16	71	20	50	43	1	0	54	1.11
76254--76307	21	2.5	22	81	9	65	48	3	0	48	1.19
77017--77043	6	4.5	6	100	0	54	14	0	0	85	0.61
77115--77221	30	3.6	30	84	3	146	52	0	3	42	1.25
77587--77626	19	2.3	16	84	16	53	20	0	2	77	0.88
78550--78653	36	3.1	31	75	23	88	50	0	0	48	1.07
78575--78625	22	2.2	24	82	6	61	52	0	0	47	1.00
78929--78975	20	2.2	20	85	7	58	48	0	0	51	1.00
78984--79028	19	2.4	19	82	10	56	46	0	0	53	1.00
79996--80025	14	2.1	15	93	6	53	50	3	20	26	1.64
80265--80311	23	1.9	23	83	12	58	48	0	4	46	1.21
80466--80506	19	2.1	19	86	13	57	41	2	0	56	1.13
80496--80547	24	2.1	25	82	10	63	36	0	3	59	1.16
80986--81072	27	3.0	27	75	19	70	42	0	0	57	0.98
80979--81041	18	3.4	19	72	18	60	38	0	0	61	0.96
81009--81104	33	3.0	32	79	11	108	43	0	0	56	0.99
81009--81058	16	2.9	18	71	14	52	42	0	0	58	0.98
80987--81120	59	2.2	59	82	10	148	43	0	0	55	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81035--81127	36	2.6	38	80	16	101	45	1	0	53	1.07
82570--82729	80	2.0	80	85	2	214	49	2	7	40	1.44
83760--83829	19	3.5	21	75	9	58	44	0	0	55	0.99
83787--83839	15	3.6	16	80	14	60	39	0	0	60	0.97
83822--83869	22	2.2	22	82	14	55	45	4	0	50	1.21
85321--85393	14	5.3	14	76	20	50	38	1	0	60	1.06
85315--85379	34	2.1	33	86	13	93	35	1	0	63	1.04
85408--85461	25	2.3	25	87	9	78	53	0	0	46	1.00
85369--85464	43	2.2	43	78	10	106	52	0	0	47	1.00
85472--85516	14	3.1	14	84	12	56	60	0	0	40	0.97
85442--85506	20	3.3	21	74	18	61	61	0	3	35	1.12
85792--85817	10	2.6	10	100	0	52	69	0	0	30	0.89
85772--85823	27	1.9	27	81	14	63	59	0	0	40	0.97
85828--85870	19	2.3	19	83	0	50	58	0	0	41	0.98
85809--85882	25	3.0	24	75	11	60	55	0	0	44	0.99
85845--85881	19	2.0	19	89	5	58	59	0	0	40	0.97
86317--86349	2	16.5	2	100	0	66	48	0	0	51	1.00
91837--91877	19	2.3	19	83	8	50	68	0	0	31	0.90
92345--92450	36	3.0	36	82	10	105	41	0	0	56	1.12
92390--92475	36	2.5	33	80	14	102	43	1	0	55	1.07
93628--93653	2	13.0	2	100	0	52	50	0	0	50	1.00
94067--94103	19	1.9	19	94	0	65	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94674--94736	21	3.1	21	70	6	58	41	4	3	50	1.39
96566--96599	3	11.3	3	100	0	68	32	0	0	67	0.91
98027--98074	16	3.1	16	81	3	53	62	2	0	35	1.07
99676--99701	2	13.0	2	100	0	52	50	50	0	0	1.00
104060--104092	2	16.5	2	100	0	66	0	0	48	51	1.00
109514--109554	21	2.0	21	86	13	59	51	0	0	48	1.00
109546--109587	22	1.9	22	90	9	68	61	0	0	38	0.96
109561--109625	34	1.9	34	84	6	87	58	0	0	41	0.98
109636--109666	16	1.9	16	93	0	53	45	9	0	45	1.36
110355--110395	3	13.7	3	100	0	82	65	0	0	34	0.93
110826--110873	23	2.1	23	84	0	60	41	0	2	56	1.11
121978--122016	21	1.9	21	89	5	62	41	7	0	51	1.31
122038--122077	13	3.2	13	89	3	55	32	0	0	67	0.91
122586--122652	22	3.2	21	74	22	52	59	0	0	40	0.97
122611--122672	28	2.2	29	77	8	76	59	1	0	38	1.07
123593--123623	7	4.4	7	100	0	62	12	29	0	58	1.35
123946--124000	21	2.5	23	75	19	62	43	0	16	40	1.48
123949--123994	21	2.2	21	88	7	67	41	0	17	41	1.49
124994--125020	14	1.9	14	100	0	54	29	7	3	59	1.42
125440--125494	20	2.7	19	80	8	56	56	9	1	32	1.41
125440--125480	20	2.1	20	86	4	57	56	7	0	36	1.27
127280--127309	12	2.5	12	94	0	51	66	6	0	26	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
128042--128165	30	4.1	30	71	15	94	40	15	1	42	1.56
128856--128917	2	32.0	2	74	18	51	43	1	1	53	1.20
128855--128917	14	4.8	14	76	18	57	42	1	1	53	1.19
128860--128917	16	3.6	16	77	13	57	43	1	1	53	1.21
129511--129572	21	2.8	21	79	18	63	41	0	0	58	0.98
129514--129566	21	2.5	22	85	11	67	41	0	0	58	0.98
130128--130153	2	13.0	2	100	0	52	50	0	0	50	1.00
130262--130328	35	1.9	35	82	8	84	52	1	0	46	1.09
137924--137981	29	2.0	28	83	9	73	46	0	5	48	1.24
138186--138229	23	1.9	23	90	0	70	63	0	0	36	0.95
138675--138720	24	1.9	24	90	0	74	21	6	28	43	1.77
143016--143093	28	2.9	28	83	7	90	23	5	21	50	1.69
143051--143119	24	2.8	24	82	4	75	21	5	26	46	1.74
147204--147238	2	17.5	2	100	0	70	0	48	0	51	1.00

Tables:   1   2

The End!