genome.fa.s700.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold700
Parameters: 2 7 7 80 10 50 1000
Length:  259550

Tables:   1   2   

This is table  2  of  2  ( 173 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
186552--186598	19	2.3	20	82	10	60	42	14	12	29	1.83
189129--189588	149	3.1	148	80	3	475	23	15	19	40	1.90
200819--201156	44	7.7	44	76	9	271	20	22	15	42	1.89
200836--201153	134	2.4	132	81	7	335	20	22	14	42	1.89
201580--201766	20	8.8	20	74	16	83	32	15	14	37	1.88
201653--201766	60	1.9	60	83	3	149	31	14	14	40	1.85
201652--201766	40	2.9	39	83	7	133	32	13	13	40	1.85
204042--204431	76	5.0	76	92	3	618	27	26	13	32	1.94
204042--204456	79	5.3	78	90	3	640	27	27	13	31	1.94
204042--204431	155	2.5	155	94	0	683	27	26	13	32	1.94
204392--204510	51	2.3	51	84	2	150	31	28	10	28	1.91
204491--204567	28	2.8	28	89	0	109	23	32	19	24	1.97
204361--204702	158	2.2	157	82	5	395	27	27	14	30	1.95
204551--204669	51	2.3	51	86	0	175	27	28	13	30	1.94
205796--206204	42	9.7	42	77	4	214	18	31	18	31	1.95
205768--205925	83	1.9	84	84	1	210	17	31	18	32	1.94
205796--206067	125	2.2	126	85	2	350	18	31	19	30	1.95
205767--206169	84	4.8	84	80	3	359	18	31	18	32	1.95
205810--206067	126	2.1	125	85	2	338	17	32	18	31	1.95
205810--206195	126	3.1	125	78	3	337	18	31	18	31	1.94
206707--206750	16	3.1	13	84	15	52	77	2	0	20	0.88
207787--207850	34	2.0	33	84	9	87	42	14	28	15	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
210927--210970	22	2.0	22	86	4	63	27	18	9	45	1.79
212787--212826	20	2.0	21	85	5	55	30	15	7	47	1.72
220046--220164	51	2.3	52	82	1	141	38	12	16	31	1.87
220207--220273	21	3.2	20	81	8	64	35	22	8	32	1.85
231973--232060	31	2.8	31	89	0	131	25	21	11	42	1.86
235192--235303	51	2.2	50	82	6	127	33	26	7	32	1.84
235315--235518	79	2.6	78	86	4	284	27	26	14	30	1.95
235315--235564	79	3.2	78	80	6	272	28	25	14	32	1.94
243429--243465	14	2.6	14	86	0	56	81	18	0	0	0.70
243702--243732	15	2.1	15	100	0	62	87	6	6	0	0.68
243702--243747	19	2.4	20	89	7	69	84	8	6	0	0.77
244698--244884	30	6.0	31	80	12	177	22	29	16	31	1.96
244693--244900	62	3.2	63	83	9	226	22	31	14	31	1.94
244693--245439	36	23.0	33	73	15	261	20	33	13	32	1.91
244792--245459	36	20.3	35	75	14	452	20	34	12	32	1.90
244816--244961	31	4.5	32	75	15	93	21	34	11	32	1.89
244988--245459	34	14.3	33	75	15	374	20	34	11	32	1.89
245100--245271	27	5.9	27	74	17	155	20	37	13	29	1.90
244792--245439	61	9.9	67	80	10	588	20	33	12	32	1.91
245443--245799	33	10.9	33	89	3	492	29	33	19	17	1.95
245805--246137	43	6.9	49	79	11	323	24	25	17	32	1.97
245803--246088	92	3.1	92	93	2	464	24	25	17	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
245989--246142	52	2.9	53	81	4	193	24	24	15	35	1.94
246092--246218	67	1.9	68	85	4	177	23	25	11	39	1.89
246888--246912	13	1.9	13	100	0	50	36	16	16	32	1.90
246869--246933	32	2.0	33	93	3	114	35	12	16	35	1.87
246974--246998	13	1.9	13	100	0	50	32	16	16	36	1.90
259169--259285	52	2.3	51	92	4	191	31	17	17	33	1.93
259294--259318	13	1.9	13	100	0	50	36	16	16	32	1.90
259359--259425	33	2.0	33	88	0	98	40	13	11	34	1.81
259381--259405	13	1.9	13	100	0	50	32	16	16	36	1.90

Tables:   1   2

The End!