genome.fa.s711.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold711
Parameters: 2 7 7 80 10 50 1000
Length:  68118

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3763--3809	23	2.1	22	88	4	67	6	19	19	55	1.64
4166--4205	15	2.9	14	85	7	55	47	10	20	22	1.79
12208--12262	28	1.9	29	85	3	76	36	25	10	27	1.89
12208--12297	29	3.1	28	74	13	76	36	26	10	26	1.88
12274--12439	29	5.8	29	78	3	156	28	28	15	27	1.96
12207--12436	58	4.0	57	73	7	189	31	26	14	27	1.95
12800--12999	78	2.5	79	81	0	222	27	27	15	30	1.96
13029--13176	52	2.9	51	79	6	151	27	20	14	37	1.92
13453--13647	52	3.7	51	76	1	147	27	22	15	34	1.95
13838--14490	52	12.6	52	75	5	453	26	24	15	33	1.95
13790--14495	156	4.5	156	78	4	690	27	23	15	33	1.95
14489--14591	52	2.0	52	82	3	127	26	18	15	39	1.90
18197--18239	22	2.0	22	85	0	59	44	0	2	53	1.13
18433--18464	2	16.0	2	100	0	64	50	0	0	50	1.00
18639--18757	26	4.6	26	75	15	86	57	0	0	42	1.04
18673--18737	16	4.1	16	75	17	64	64	0	0	35	0.94
18664--18739	29	2.6	31	78	15	83	61	0	0	38	0.96
18644--18751	22	4.8	22	70	18	64	59	0	0	39	1.04
19905--19982	41	1.9	41	94	0	138	24	20	16	38	1.93
20077--20154	41	1.9	41	94	0	138	24	20	16	38	1.93
19851--20194	172	2.0	172	99	0	679	33	15	12	37	1.86
21577--21629	2	26.5	2	88	0	79	45	3	0	50	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22861--22887	2	13.5	2	100	0	54	48	0	0	51	1.00
25163--25213	14	3.4	14	82	15	50	27	0	0	72	0.85
25442--25488	15	3.1	15	87	3	58	31	0	0	68	0.90
25455--25500	15	2.8	16	87	9	58	36	2	0	60	1.09
33959--34021	31	2.0	33	87	6	94	46	0	4	49	1.23
34824--34858	18	1.9	18	100	0	70	54	0	0	45	0.99
35208--35317	2	55.0	2	83	7	134	47	6	0	46	1.28
35711--35748	18	2.1	19	85	5	51	39	0	2	57	1.12
39794--39819	13	2.0	13	100	0	52	30	15	15	38	1.88
39774--39837	32	2.0	33	87	3	94	29	14	14	42	1.84
43058--43099	21	2.0	21	85	0	57	23	28	4	42	1.74
44255--44280	13	2.0	13	100	0	52	38	15	15	30	1.88
44237--44300	32	2.0	33	90	3	103	42	15	14	28	1.86
45236--45326	37	2.5	37	90	0	137	27	15	20	36	1.93
47054--47110	26	2.2	26	87	0	78	45	12	3	38	1.59
47062--47112	26	2.0	26	92	0	84	45	9	3	41	1.56
47860--47912	19	2.7	20	91	2	90	32	11	16	39	1.85
47955--47979	13	1.9	13	100	0	50	32	16	16	36	1.90
47988--48116	52	2.5	52	94	2	224	34	17	18	29	1.94
48947--48999	21	2.5	21	78	6	63	24	22	16	35	1.95
61248--61447	79	2.5	80	86	1	278	29	16	28	26	1.96
61429--61480	27	2.0	26	92	3	86	25	15	30	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61462--61577	51	2.4	47	82	8	126	33	11	24	31	1.90
63946--63971	13	2.0	13	100	0	52	38	15	15	30	1.88
63925--63991	33	2.0	33	88	0	98	43	16	14	25	1.86
64010--64077	19	3.9	18	73	23	74	38	16	11	33	1.85
65980--66042	1	63.0	1	77	0	63	88	11	0	0	0.50
65978--66058	15	5.5	14	80	11	90	85	14	0	0	0.61
65978--66057	19	4.1	19	82	14	92	85	15	0	0	0.61
65980--66058	26	3.2	25	84	10	99	86	13	0	0	0.58
65978--66042	7	9.9	7	86	6	84	87	12	0	0	0.54
67485--68063	29	19.5	29	75	11	392	27	30	15	25	1.96
67579--67753	91	1.9	89	82	6	219	26	30	17	25	1.97
67485--68018	121	4.5	121	80	11	686	27	30	15	26	1.96
67485--68116	240	2.6	239	87	8	858	26	30	16	26	1.96
67845--67918	35	2.2	35	90	4	116	22	33	10	32	1.89
67845--67929	33	2.5	35	86	3	102	22	31	14	31	1.93

Tables:   1

The End!