genome.fa.s718.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold718
Parameters: 2 7 7 80 10 50 1000
Length:  16960

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2106--2131	13	2.0	13	100	0	52	38	15	15	30	1.88
2085--2151	33	2.0	33	88	0	98	43	16	14	25	1.86
2171--2239	19	3.9	18	72	25	67	36	17	13	33	1.88
2193--2217	13	1.9	13	100	0	50	24	24	16	36	1.94
2174--2236	33	1.9	32	90	3	99	33	19	14	33	1.91
2295--2351	21	2.7	21	97	0	105	36	19	10	33	1.86
3174--3444	55	4.9	55	88	3	375	22	20	30	27	1.98
3332--3419	26	3.3	26	70	14	88	20	18	35	26	1.95
3174--3487	110	2.8	109	84	6	371	23	21	28	25	1.99
4111--4425	55	5.7	55	85	5	375	23	20	28	27	1.99
4269--4356	26	3.3	26	67	14	79	19	17	35	28	1.94
4293--4380	29	3.1	29	64	15	76	20	18	32	28	1.96
5047--5360	55	5.6	54	86	6	373	23	21	28	26	1.99
5205--5292	26	3.3	26	71	20	90	19	18	34	28	1.95
5983--6298	55	5.7	55	84	7	352	24	20	28	26	1.99
6165--6253	29	3.2	29	68	26	91	22	19	32	25	1.97
6920--7232	55	5.7	55	85	7	377	23	21	28	26	1.99
6920--7190	109	2.5	109	87	5	368	21	21	30	26	1.98
2466--14492	937	13.0	937	86	7	16788	28	19	26	26	1.98
7854--8169	55	5.7	55	86	5	377	23	21	28	26	1.99
8012--8099	26	3.3	26	68	20	81	19	18	35	27	1.95
8788--9103	55	5.7	55	84	5	359	23	21	28	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9734--9985	55	4.5	55	88	3	326	24	19	29	26	1.98
9828--9915	26	3.3	26	68	20	81	19	18	35	27	1.95
9796--9935	29	5.0	29	64	22	102	19	20	32	28	1.97
10608--10877	55	4.9	55	87	5	368	21	20	30	27	1.98
11542--11801	55	4.7	54	80	8	238	25	21	27	26	1.99
11533--11749	55	4.0	54	81	6	240	23	20	28	27	1.99
12424--12738	55	5.7	55	82	7	327	24	20	27	26	1.99
12425--12737	109	2.8	109	82	7	346	24	21	27	26	1.99
12608--12694	29	3.1	29	67	26	87	22	19	31	26	1.98
13364--13627	54	4.9	55	81	10	271	22	19	29	28	1.98
13364--13627	109	2.5	106	81	9	288	22	19	29	28	1.98
14284--14488	53	3.8	52	74	8	148	22	20	27	29	1.98
12479--15364	919	3.2	869	72	17	2525	28	19	26	25	1.99
15148--15464	55	5.7	55	81	7	327	23	20	29	25	1.99
16104--16347	56	4.5	55	79	15	242	19	22	29	28	1.98
16185--16389	58	3.6	58	78	10	160	22	21	26	29	1.99
14362--16960	933	2.8	929	89	7	3922	28	19	26	25	1.99

Tables:   1

The End!