Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold729
Parameters: 2 7 7 80 10 50 1000
Length:  181220

Tables:   1   2   

This is table  2  of  2  ( 162 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
117198--117231
5
7.0
5
86
6
52
79
0
0
20
0.73
117409--117455
22
2.3
20
77
19
53
27
2
0
70
0.99
117426--117499
36
2.0
38
94
5
134
32
5
0
62
1.18
118779--118803
1
25.0
1
100
0
50
0
0
0
100
0.00
122630--122704
20
3.8
20
74
0
78
34
12
12
41
1.79
122720--122749
15
2.0
15
100
0
60
33
20
20
26
1.97
130752--130807
23
2.5
23
97
2
105
62
8
10
17
1.52
131722--131796
20
3.8
20
80
3
80
40
12
13
34
1.81
131719--131796
40
2.0
39
87
2
111
39
12
12
34
1.82
132404--133773
28
47.5
28
83
8
1151
22
17
32
27
1.96
132404--133645
203
6.1
200
84
5
1450
21
17
32
28
1.96
132358--133645
258
4.9
258
84
7
1435
21
18
32
28
1.97
141250--141304
22
2.5
22
100
0
110
61
9
10
18
1.54
142219--142293
20
3.8
20
80
3
80
40
12
13
34
1.81
142216--142293
40
2.0
39
87
2
111
39
12
12
34
1.82
142901--144270
28
47.5
28
83
8
1151
22
17
32
27
1.96
142901--144142
203
6.1
200
84
5
1450
21
17
32
28
1.96
142855--144142
258
4.9
258
84
7
1435
21
18
32
28
1.97
152694--152768
20
3.8
20
80
3
80
40
12
13
34
1.81
152691--152768
40
2.0
39
87
2
111
39
12
12
34
1.82
161232--161280
14
3.6
13
84
15
64
89
6
2
2
0.62
161232--161290
22
2.7
22
84
5
75
86
6
3
3
0.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
161232--161280
1
49.0
1
79
0
53
89
6
2
2
0.62
162505--162807
29
10.5
29
90
4
407
29
33
15
21
1.95
162503--163875
56
24.3
57
78
8
1046
27
32
17
22
1.97
162763--162850
44
2.0
45
86
6
126
30
32
13
22
1.93
162809--163920
28
38.9
28
86
6
1240
27
31
18
22
1.97
164482--164556
20
3.8
20
80
0
96
33
13
12
41
1.81
164482--164559
40
2.0
39
89
2
120
33
12
12
41
1.82
169846--169893
24
2.0
24
95
0
87
52
8
14
25
1.69
171650--171722
30
2.4
30
84
4
94
45
9
9
35
1.70
171752--171813
28
2.2
28
85
5
81
41
8
1
48
1.42
172289--172314
3
8.7
3
100
0
52
30
0
0
69
0.89
173794--173851
30
1.9
30
92
0
98
48
0
6
44
1.29
175834--175875
16
2.7
16
88
3
59
45
33
11
9
1.73
176654--176724
16
4.4
16
83
10
83
42
26
12
18
1.86
176679--176755
16
4.8
16
80
1
55
46
25
11
15
1.80
176826--176863
19
2.0
19
100
0
76
31
5
31
31
1.80
177128--177202
20
3.8
19
82
3
87
34
12
12
41
1.79
177128--177205
40
2.0
39
85
7
104
34
11
12
41
1.80
178113--178169
23
2.5
23
94
0
96
19
12
8
59
1.58
181085--181129
18
2.5
18
81
0
54
51
0
0
48
1.00

Tables:   1   2

The End!