genome.fa.s785.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold785
Parameters: 2 7 7 80 10 50 1000
Length:  21409

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2889--2950	1	62.0	1	75	0	52	87	6	6	0	0.68
2889--2927	11	3.4	11	92	7	60	89	7	2	0	0.56
2889--2949	12	4.9	12	81	16	63	86	6	6	0	0.69
2889--2950	28	2.2	28	85	2	81	87	6	6	0	0.68
3946--5039	55	19.6	55	86	7	1438	27	26	19	25	1.99
3910--5039	171	6.7	165	86	7	1458	27	26	19	25	1.99
4227--4312	27	3.1	27	60	3	64	25	23	22	29	1.99
3910--5000	332	3.2	332	91	4	1620	27	26	19	25	1.99
3946--5039	277	3.9	275	87	6	1546	27	26	19	25	1.99
4902--4984	27	3.0	28	64	22	75	28	31	20	19	1.97
4781--5038	117	2.3	117	87	6	370	26	27	20	24	1.99
5826--5893	19	3.9	19	78	21	85	35	11	14	38	1.83
5828--5890	32	2.0	32	96	0	117	34	12	15	36	1.86
5847--5871	13	1.9	13	100	0	50	36	16	16	32	1.90
5933--5958	13	2.0	13	100	0	52	30	15	15	38	1.88
5913--5979	33	2.0	33	88	0	98	25	14	16	43	1.86
8308--8649	52	6.5	53	70	17	214	30	26	11	31	1.92
8425--8493	27	2.5	27	85	2	84	26	31	20	21	1.98
8313--8648	104	3.2	103	72	13	306	30	25	11	31	1.92
8633--8709	28	2.8	28	87	0	100	23	33	19	23	1.97
8311--8705	212	1.9	212	89	3	625	29	27	12	30	1.93
8371--8782	107	3.9	107	73	9	304	28	27	14	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8663--8865	78	2.6	77	80	4	212	24	29	16	29	1.96
11149--11472	170	1.9	170	85	3	456	28	11	21	37	1.89
11149--11520	170	2.2	169	83	4	428	26	12	20	39	1.89
12831--12855	9	2.8	9	100	0	50	32	0	8	60	1.26
18466--18537	28	2.6	27	86	6	99	25	15	30	29	1.96
18415--18615	107	1.9	107	85	4	280	33	11	24	30	1.91
18495--18745	79	3.2	77	85	5	324	35	12	22	29	1.91
18686--18795	53	2.1	51	88	3	157	41	10	19	29	1.83
18641--19011	132	2.8	130	80	3	402	38	10	22	27	1.87
18811--18931	53	2.3	53	81	2	138	38	9	24	27	1.87
18860--19012	81	1.9	80	89	1	234	32	11	27	29	1.91
18860--19053	80	2.4	81	84	5	234	32	11	27	28	1.92
19794--20142	32	10.9	32	99	0	689	34	12	18	34	1.88
20188--20212	13	1.9	13	100	0	50	32	16	16	36	1.90
20221--20346	52	2.4	52	98	0	243	34	19	19	26	1.96

Tables:   1

The End!