genome.fa.s826.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold826
Parameters: 2 7 7 80 10 50 1000
Length:  341534

Tables:   1   2   

This is table  2  of  2  ( 174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
215569--215905	158	2.1	159	83	5	430	34	11	25	29	1.90
215559--215918	81	4.5	79	80	7	383	33	10	26	29	1.90
218263--218339	32	2.5	31	86	2	109	37	14	19	28	1.91
218263--218341	31	2.5	32	87	2	115	37	13	18	29	1.90
222470--222501	2	16.0	2	93	0	55	46	0	0	53	1.00
235520--235583	20	2.9	24	76	23	61	78	0	21	0	0.76
235519--235613	11	8.0	12	75	14	65	77	0	21	1	0.82
235530--235613	16	5.7	14	75	22	66	77	0	21	1	0.84
235546--235579	4	8.5	4	93	0	59	79	0	20	0	0.73
235520--235614	12	8.3	11	75	10	66	78	0	20	1	0.80
236423--236870	110	4.1	108	76	9	379	33	13	19	33	1.91
236423--236930	110	4.7	106	76	11	320	32	14	19	33	1.92
241549--241679	52	2.5	52	89	0	199	29	14	17	38	1.90
241549--241699	52	2.9	52	86	2	169	31	14	17	36	1.90
241688--241712	13	1.9	13	100	0	50	36	16	16	32	1.90
245572--245646	20	3.8	20	80	3	80	40	12	13	34	1.81
245569--245646	40	2.0	39	87	2	111	39	12	12	34	1.82
252562--252756	76	2.6	75	79	8	207	28	14	14	42	1.85
252635--252784	75	2.0	76	84	6	198	26	14	16	43	1.86
253247--253332	41	2.1	41	85	8	113	16	19	15	48	1.81
254659--254711	6	8.8	6	85	8	63	22	0	1	75	0.90
273699--273984	142	2.0	142	100	0	572	38	17	18	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
276181--276210	2	15.0	2	92	0	51	46	53	0	0	1.00
280170--280223	25	2.1	27	82	6	67	27	7	12	51	1.66
283482--283520	2	19.5	2	94	0	69	0	48	2	48	1.15
283767--283809	2	21.5	2	90	0	68	48	0	4	46	1.22
286078--286182	20	5.7	19	76	17	96	38	12	17	32	1.87
286081--286181	52	1.9	53	84	6	134	38	11	17	31	1.86
286823--286861	19	2.1	19	85	4	53	23	5	25	46	1.73
287443--287491	24	2.0	24	84	7	64	28	12	24	34	1.91
288249--288286	20	2.0	20	94	5	69	36	15	10	36	1.82
288404--288460	19	3.0	20	82	7	73	36	15	14	33	1.88
289495--289544	21	2.4	21	83	9	59	48	0	20	32	1.50
289502--289544	21	2.0	22	86	4	61	51	0	20	27	1.48
295127--295156	13	2.3	13	94	0	51	40	13	13	33	1.83
295206--295251	20	2.3	20	85	3	58	39	17	10	32	1.84
295781--295823	16	2.6	16	85	3	50	51	27	6	13	1.67
300522--300572	18	2.8	18	74	14	50	41	0	7	50	1.31
301377--301482	53	2.0	53	81	1	122	37	24	12	25	1.90
301474--301557	32	2.6	32	78	0	96	40	27	16	15	1.89
301535--301605	16	4.4	16	81	0	88	46	21	12	19	1.83
301535--301618	32	2.6	32	77	7	98	46	22	13	17	1.83
301474--301618	16	9.1	16	74	3	85	42	24	15	17	1.87
301487--301618	48	2.8	48	82	2	149	44	24	14	16	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
307579--307651	36	2.0	36	100	0	146	41	13	5	39	1.68
309212--309253	21	2.0	21	90	0	66	28	16	30	23	1.96
315364--315484	52	2.3	52	97	0	224	28	18	18	34	1.94
315364--315504	52	2.7	51	90	4	212	30	17	18	33	1.94
315493--315517	13	1.9	13	100	0	50	36	16	16	32	1.90
315587--315611	13	1.9	13	100	0	50	32	16	16	36	1.90
317535--317578	21	2.0	22	91	4	72	34	9	0	56	1.31
323591--323627	18	2.1	17	90	5	56	37	0	8	54	1.30
325837--326061	119	1.9	119	89	1	353	36	7	21	34	1.81
336829--336863	17	2.1	17	89	5	54	14	14	0	71	1.15

Tables:   1   2

The End!