genome.fa.s830.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold830
Parameters: 2 7 7 80 10 50 1000
Length:  64357

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1340--2655	474	2.8	477	82	5	1587	35	14	19	30	1.92
2223--6867	476	10.0	443	76	11	1691	35	14	19	30	1.92
3206--11795	477	18.0	476	79	6	7947	35	14	19	30	1.92
7886--8583	159	4.4	159	67	13	441	35	14	18	30	1.91
11146--12558	634	2.3	615	82	7	1608	34	15	19	31	1.93
11645--16254	158	29.1	158	66	13	473	35	14	19	30	1.92
11759--17156	475	11.3	476	80	5	4375	35	14	19	30	1.92
11759--17156	951	5.7	950	76	7	4308	35	14	19	30	1.92
17009--17313	158	1.9	157	88	3	452	37	14	18	30	1.91
16534--17789	633	2.0	633	85	3	1706	34	15	19	30	1.92
17149--19086	475	4.1	474	84	5	2368	35	14	19	30	1.91
16534--18024	633	2.4	631	80	5	1415	33	14	19	31	1.93
23100--25210	710	3.0	710	98	0	4060	24	23	18	33	1.96
25467--25527	9	7.1	9	74	10	56	13	42	0	44	1.43
25439--25557	42	2.8	42	88	0	175	10	42	0	45	1.45
25472--25548	12	6.9	12	76	19	62	12	45	0	41	1.43
27173--27495	158	2.0	158	88	2	479	36	16	17	29	1.93
27331--30383	475	6.4	474	85	3	3901	36	14	18	30	1.91
29810--31042	665	1.9	663	87	2	1805	35	15	19	30	1.92
30829--31994	158	7.4	157	67	12	528	35	15	18	31	1.92
30473--41729	475	23.4	473	74	10	6166	34	14	19	30	1.92
34639--34947	158	2.0	158	91	1	503	37	15	17	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36091--41729	475	11.8	475	85	2	7243	34	14	20	30	1.92
37759--41478	159	23.4	157	67	9	1249	34	14	20	30	1.93
48003--48074	12	6.5	11	77	16	62	15	44	0	40	1.46
47970--48075	42	2.5	42	89	3	151	16	43	0	39	1.54
48834--48860	14	1.9	14	100	0	54	7	7	7	77	1.12
51691--51749	9	6.9	9	69	11	52	13	45	0	40	1.43
51696--51772	12	6.9	12	72	21	62	12	46	0	40	1.42
51659--51772	42	2.7	42	90	1	165	11	44	1	42	1.50
51687--51772	24	3.8	24	75	17	94	13	44	0	41	1.44
53470--56976	476	7.4	474	84	4	4272	34	14	20	30	1.92
53567--54698	158	7.1	160	65	12	420	34	14	20	30	1.92
56823--61372	476	9.6	470	72	9	2267	35	15	19	29	1.92
56298--60930	158	29.2	158	69	10	1341	35	15	19	29	1.92
57887--60425	790	3.2	790	92	0	4136	36	14	19	28	1.92
61387--62992	474	3.4	472	84	5	1915	34	14	20	29	1.93
62832--63154	162	2.0	160	81	7	382	36	15	19	28	1.92

Tables:   1

The End!