genome.fa.s834.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold834
Parameters: 2 7 7 80 10 50 1000
Length:  104694

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1462--1508	22	2.3	19	85	10	58	70	4	0	25	1.05
2005--2067	33	1.9	33	86	0	90	25	15	17	41	1.89
2707--2755	14	3.5	14	76	20	57	51	0	2	46	1.12
2707--2754	13	3.5	13	81	18	53	50	0	2	47	1.12
2749--2782	17	2.0	17	88	11	52	50	0	0	50	1.00
2745--2782	16	2.4	16	86	8	51	47	0	0	52	1.00
4262--4295	9	3.7	9	96	4	59	76	0	0	23	0.79
4262--4305	18	2.6	17	86	13	56	75	0	0	25	0.81
4859--4902	18	2.4	18	88	7	63	29	0	4	65	1.12
4858--4936	18	4.2	18	74	9	59	35	1	2	60	1.18
7572--7995	88	4.8	88	81	4	430	39	13	15	31	1.85
7572--7971	175	2.3	176	81	4	443	39	13	15	32	1.85
9089--9316	97	2.3	98	81	7	248	38	10	20	30	1.86
13376--13445	16	4.4	16	83	0	77	14	17	25	42	1.86
14548--14579	13	2.5	13	94	0	55	31	15	12	40	1.85
16287--16311	3	8.3	3	100	0	50	32	0	36	32	1.58
22328--22392	33	2.0	33	90	0	103	24	24	20	30	1.98
23435--23459	13	1.9	13	100	0	50	36	16	16	32	1.90
24243--24298	16	3.5	16	75	4	51	16	14	25	44	1.84
24979--25003	13	1.9	13	100	0	50	36	16	16	32	1.90
24959--25025	33	2.0	33	88	0	98	34	11	13	40	1.81
25067--25091	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25100--25224	52	2.4	52	94	2	216	34	18	17	29	1.94
29477--29505	13	2.3	13	94	5	51	58	10	0	31	1.31
32983--33141	66	2.5	63	76	10	157	42	13	24	20	1.87
33032--33246	66	3.3	65	74	7	209	44	13	22	19	1.86
32980--33248	132	2.1	127	82	8	319	43	13	23	18	1.86
34111--34920	76	10.8	76	79	4	622	44	13	16	25	1.84
34199--34920	229	3.2	223	81	5	717	45	12	16	26	1.83
34705--34840	65	2.1	65	87	5	195	47	11	14	25	1.78
34641--34981	141	2.4	139	81	3	398	47	11	14	27	1.77
34996--35208	110	1.9	110	83	5	270	44	17	17	20	1.87
35621--35658	20	1.9	20	89	10	60	47	10	23	18	1.79
35611--35715	50	2.1	50	80	3	113	50	12	17	20	1.77
35657--35888	87	2.7	87	80	3	232	49	12	14	22	1.78
35758--35966	44	4.8	44	66	12	126	47	14	15	22	1.82
35670--35965	88	3.4	88	80	4	285	48	13	15	22	1.80
36363--36426	29	2.2	29	91	0	101	46	10	7	34	1.68
36639--36945	112	2.7	112	85	2	393	37	11	16	34	1.85
38490--38516	2	13.5	2	100	0	54	51	0	0	48	1.00
40968--41617	300	2.2	302	83	6	793	41	18	13	26	1.87
42196--42258	30	2.1	30	90	0	99	57	20	4	17	1.58
45439--45494	19	2.9	19	86	2	76	30	17	12	39	1.87
50295--50320	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50275--50338	32	2.0	33	90	3	103	28	14	18	39	1.90
50275--50345	19	4.0	18	72	25	62	26	12	21	39	1.89
54450--54519	22	3.1	22	77	6	77	78	2	1	17	0.94
54444--54519	37	2.1	37	82	4	93	77	2	1	18	0.95
55393--55426	11	3.0	11	86	4	50	82	0	14	2	0.79
69680--75798	42	145.5	42	65	14	830	19	26	17	36	1.94
69625--70132	85	6.0	83	78	5	484	19	28	17	34	1.94
69807--70342	211	2.5	210	81	5	598	20	28	17	33	1.95
70060--75798	85	68.3	85	75	6	3064	19	26	17	36	1.94
70102--75765	169	33.7	170	75	7	2852	19	26	17	36	1.94
70954--70991	16	2.4	16	100	0	76	26	28	13	31	1.93
71321--71742	212	2.0	211	79	4	456	19	28	16	35	1.94
71670--71817	73	2.0	74	80	3	165	23	26	14	35	1.93
72240--75798	84	42.3	85	76	6	2358	19	26	18	36	1.94
75398--75696	81	3.6	80	74	8	213	20	27	18	34	1.95
74931--75765	250	3.3	250	78	4	571	18	25	18	36	1.94
76306--76364	9	6.8	9	79	14	61	76	8	0	15	1.01
76315--76356	17	2.4	18	76	11	52	76	9	0	14	1.02
76289--76364	10	8.4	9	68	16	50	73	7	0	18	1.06
77659--77697	17	2.4	16	84	16	53	7	7	10	74	1.22
79115--79149	3	11.7	3	100	0	70	34	0	0	65	0.93
81247--81298	20	2.6	19	82	11	61	30	17	13	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83634--83674	21	2.0	21	90	0	64	36	17	9	36	1.82
84425--84477	18	2.7	19	82	14	63	62	0	0	37	0.96
84362--84474	26	4.2	26	72	13	72	59	0	0	39	1.04
84383--84471	18	4.9	18	69	15	67	57	1	0	41	1.06
85291--85331	20	2.1	20	90	4	66	51	0	0	48	1.00
90067--90120	21	2.6	21	85	8	67	37	5	25	31	1.79
90084--90126	20	2.1	21	86	4	61	34	6	20	37	1.80
90084--90126	21	2.0	21	86	8	61	34	6	20	37	1.80
92302--92370	34	2.1	32	86	10	95	34	15	14	34	1.89
92411--92463	20	2.6	21	76	8	56	28	16	15	39	1.89
92451--92475	13	1.9	13	100	0	50	36	16	16	32	1.90
99995--100038	21	2.1	21	83	8	54	25	31	4	38	1.76
101844--101882	13	3.0	13	100	0	78	38	15	15	30	1.88

Tables:   1

The End!