genome.fa.s857.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold857
Parameters: 2 7 7 80 10 50 1000
Length:  84826

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1290--1527	98	2.5	96	86	2	334	33	16	24	25	1.96
3679--3785	31	3.5	31	73	10	119	40	12	17	29	1.86
3661--3786	62	2.0	62	100	0	252	39	12	18	29	1.87
3811--3890	20	3.2	24	71	26	69	47	10	15	27	1.77
3731--3878	74	2.0	75	89	1	226	42	12	16	29	1.84
4834--4902	30	2.3	30	82	9	79	21	15	30	31	1.95
4862--5443	28	20.5	28	78	7	489	23	17	30	28	1.97
4862--5442	84	6.8	83	79	7	569	23	17	30	28	1.97
12780--13290	49	10.6	49	73	5	434	32	17	25	25	1.97
12918--13398	98	5.1	98	81	6	535	32	17	25	24	1.97
12727--13398	196	3.6	186	81	6	735	32	17	25	24	1.97
13407--13590	29	6.3	30	79	11	179	17	16	33	33	1.92
13407--13590	59	3.2	58	87	7	241	17	16	33	33	1.92
13570--14105	27	17.7	32	74	13	265	31	13	32	22	1.93
13569--14166	64	9.9	62	72	16	296	32	13	31	22	1.93
13716--14166	181	2.5	176	78	12	436	32	13	31	21	1.93
13631--14078	96	4.9	94	72	16	255	31	13	32	22	1.92
13788--14359	30	18.9	30	73	14	211	33	15	30	21	1.94
14086--14352	61	4.4	60	79	6	268	32	16	27	22	1.96
14079--14311	123	1.9	123	89	1	360	34	16	27	21	1.95
14087--14362	123	2.3	123	83	3	344	33	16	27	22	1.95
15635--15685	11	4.7	10	81	13	57	3	0	11	84	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15633--15688	16	3.7	15	79	11	60	3	0	12	83	0.76
26230--26255	13	2.0	13	100	0	52	38	15	15	30	1.88
28494--28538	21	2.1	21	84	8	56	53	4	20	22	1.63
30342--30372	15	2.1	15	93	0	53	48	16	22	12	1.80
32387--32466	20	3.8	20	75	15	79	26	15	15	43	1.85
32452--32490	13	3.0	13	96	0	69	30	17	15	35	1.91
32611--32657	21	2.3	21	79	20	55	34	19	4	42	1.70
32613--32655	20	2.2	19	84	16	52	32	18	4	44	1.71
34255--34314	29	2.1	29	100	0	120	40	3	10	46	1.54
35042--35067	13	2.0	13	100	0	52	38	15	15	30	1.88
37028--37072	15	3.0	15	76	0	54	15	0	42	42	1.47
44422--44758	98	3.4	98	90	1	498	32	15	26	25	1.95
55933--55957	13	1.9	13	100	0	50	32	16	16	36	1.90
55913--55977	33	2.0	33	87	0	94	29	18	15	36	1.91
55946--56144	83	2.4	83	96	0	364	31	15	22	30	1.95
56090--56143	19	2.8	19	88	2	81	33	14	22	29	1.94
56092--56162	20	3.6	19	84	3	61	36	12	21	29	1.90
57219--57275	19	2.9	19	84	2	69	33	14	15	36	1.88
57304--57372	33	2.1	33	84	10	88	33	13	17	36	1.88
57500--57545	22	2.1	22	84	8	58	36	19	10	32	1.87
59746--60380	66	9.6	66	73	4	229	18	24	13	43	1.86
60123--60382	134	1.9	134	83	4	337	16	23	15	44	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60193--60401	67	3.1	66	78	3	220	15	22	15	45	1.84
61310--61348	15	2.6	15	92	8	62	35	12	17	33	1.88
63437--63462	13	2.0	13	100	0	52	30	15	15	38	1.88
63447--63563	51	2.3	51	85	7	159	31	17	13	37	1.88
67018--67698	155	4.4	154	77	7	623	25	14	20	39	1.90
67017--67613	309	1.9	309	81	5	715	26	13	21	39	1.90
73362--73387	13	2.0	13	100	0	52	30	15	15	38	1.88
73342--73406	33	2.0	32	87	3	94	32	18	13	35	1.90
73371--73427	19	2.9	19	84	2	69	33	14	15	36	1.88
75088--75121	9	3.8	9	88	11	52	44	0	26	29	1.55
79641--79665	13	1.9	13	100	0	50	36	16	16	32	1.90
82118--82169	19	2.7	20	85	8	63	26	13	15	44	1.84
82235--82265	13	2.4	13	94	0	53	35	16	9	38	1.81
83508--83552	20	2.1	22	88	8	67	42	0	22	35	1.54
84686--84735	19	2.7	19	81	9	59	36	12	18	34	1.87

Tables:   1

The End!