genome.fa.s863.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold863
Parameters: 2 7 7 80 10 50 1000
Length:  49693

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1312--1383	20	3.6	19	82	14	83	30	16	15	37	1.90
1429--1482	19	2.8	20	82	5	74	35	14	16	33	1.90
10597--10768	51	3.4	51	79	1	193	29	15	27	27	1.96
10908--10982	28	2.6	28	89	2	105	24	21	30	24	1.99
10749--11085	159	2.1	158	86	3	489	31	14	26	27	1.95
21026--21123	1	98.0	1	79	0	88	87	5	7	0	0.66
21026--21113	39	2.3	38	94	3	151	87	4	7	0	0.66
21025--21123	37	2.7	37	88	11	150	86	5	8	0	0.69
21024--21123	33	3.0	32	84	8	128	86	5	9	0	0.72
23538--23709	49	3.7	47	73	20	173	41	15	16	26	1.89
23587--23660	20	3.7	20	80	3	87	44	14	16	24	1.85
23538--23707	89	1.9	89	92	0	286	41	15	17	26	1.88
24232--24333	41	2.5	41	85	7	136	45	9	26	18	1.81
24321--24734	45	9.8	42	70	16	186	39	12	27	21	1.88
24417--24739	45	7.7	43	73	14	255	38	12	27	21	1.90
24359--24579	83	2.6	85	83	7	272	40	10	28	19	1.85
24423--24734	128	2.5	126	85	7	413	37	12	28	21	1.90
24555--24739	83	2.2	83	84	2	237	38	12	26	22	1.90
24718--25069	61	5.9	60	84	7	416	28	21	25	25	1.99
24901--25091	55	3.3	55	86	10	276	26	20	25	27	1.99
25099--25336	61	4.1	61	81	13	218	26	19	27	26	1.99
25115--25357	55	4.3	55	85	6	265	24	20	26	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24904--25307	211	1.9	207	85	7	553	26	19	26	26	1.99
24831--25461	266	2.3	268	87	3	910	27	19	27	25	1.99
36665--36690	13	2.0	13	100	0	52	38	15	15	30	1.88
36643--36709	19	3.8	19	75	24	83	32	11	17	37	1.87
36645--36709	33	2.0	33	96	3	123	33	12	18	35	1.88
36751--36775	13	1.9	13	100	0	50	32	16	16	36	1.90
36783--36910	52	2.5	52	94	1	231	34	17	19	28	1.95
41023--41050	13	2.2	13	100	0	56	39	17	14	28	1.89
41093--41157	33	2.0	33	87	0	94	40	13	12	33	1.82
41113--41137	13	1.9	13	100	0	50	32	16	16	36	1.90

Tables:   1

The End!