Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold877
Parameters: 2 7 7 80 10 50 1000
Length:  219531

Tables:   1   2   

This is table  2  of  2  ( 150 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
191283--191336
29
1.9
27
85
7
72
44
0
1
53
1.11
191409--191461
22
2.4
22
75
9
54
54
1
1
41
1.22
191550--191601
27
1.9
27
88
0
77
48
1
1
48
1.24
191796--191836
22
1.9
22
90
5
66
43
2
0
53
1.13
193832--193869
2
19.0
2
100
0
76
50
0
0
50
1.00
194463--194512
16
3.1
16
81
16
59
40
20
18
22
1.92
195247--195347
53
1.9
53
82
8
125
39
24
13
21
1.90
195990--196022
13
2.5
14
85
14
52
54
9
0
36
1.32
196402--196443
18
2.3
18
87
0
57
45
0
0
54
0.99
196616--196653
16
2.5
16
87
8
53
57
5
2
34
1.35
196731--196825
49
2.0
48
95
2
172
56
4
3
35
1.34
196732--196851
49
2.6
47
87
11
151
58
3
2
35
1.28
200160--200195
17
2.1
17
100
0
72
27
22
13
36
1.92
200246--200370
20
5.7
20
71
18
88
41
13
14
30
1.84
200246--200420
91
1.9
91
88
1
262
40
13
15
31
1.85
200773--200800
14
2.0
14
100
0
56
78
0
7
14
0.95
200807--200863
21
2.7
21
97
0
105
33
10
19
36
1.86
200919--200986
19
3.9
19
78
21
85
35
11
14
38
1.83
200940--200964
13
1.9
13
100
0
50
36
16
16
32
1.90
200921--200983
32
2.0
32
96
0
117
34
12
15
36
1.86
201026--201051
13
2.0
13
100
0
52
30
15
15
38
1.88
201006--201072
33
2.0
33
88
0
98
25
14
16
43
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
203402--203736
52
6.4
51
68
15
189
29
25
12
31
1.93
203400--203806
212
1.9
212
87
3
595
27
26
14
31
1.95
216289--216341
18
2.8
19
80
8
63
84
9
5
0
0.76
216288--216363
14
5.1
14
71
14
62
81
9
9
0
0.87
216288--216344
15
3.6
16
81
11
64
84
10
5
0
0.77
217430--218486
53
19.4
54
77
16
984
29
28
20
21
1.98
217426--218433
220
4.6
217
80
14
972
29
28
20
21
1.98
219166--219225
29
2.0
30
90
9
97
36
13
11
38
1.81

Tables:   1   2

The End!