Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold885
Parameters: 2 7 7 80 10 50 1000
Length:  107980

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3738--3777
21
1.9
21
85
10
55
35
5
27
32
1.79
4199--4282
42
2.0
42
97
0
159
35
10
19
34
1.86
4917--4952
14
2.6
14
91
4
56
58
2
2
36
1.27
4917--4957
13
3.1
13
86
6
55
53
2
2
41
1.27
5186--5223
19
2.0
20
89
5
60
65
0
2
31
1.06
5161--5247
20
4.3
19
75
16
68
64
0
1
34
1.01
5227--5257
14
2.2
14
94
0
53
64
3
0
32
1.09
5762--5796
17
2.1
17
89
10
54
68
0
0
31
0.90
6009--6053
13
3.5
13
85
11
65
33
0
0
66
0.92
7436--7472
17
2.1
19
90
10
60
45
2
0
51
1.15
7472--7505
14
2.5
13
90
4
50
55
0
0
44
0.99
8287--8330
19
2.4
19
82
17
58
54
0
0
45
0.99
13661--13724
27
2.5
25
77
7
67
45
21
6
26
1.76
21734--21792
29
2.0
28
83
6
73
50
3
5
40
1.41
22804--22843
19
2.0
20
90
4
64
32
0
0
67
0.91
23043--23229
86
2.2
86
90
0
293
34
5
5
54
1.46
26473--26503
3
10.3
3
100
0
62
32
0
0
67
0.91
27603--27656
27
2.0
28
85
3
74
61
0
1
37
1.07
28865--28896
13
2.3
15
89
10
50
50
0
0
50
1.00
29702--29765
26
2.4
25
80
14
67
31
1
1
65
1.11
29844--30204
195
1.9
195
85
4
514
34
5
5
54
1.48
36369--36459
39
2.3
39
76
0
92
34
21
9
34
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41398--41424
2
13.5
2
100
0
54
51
0
0
48
1.00
42142--42196
27
2.0
27
100
0
110
25
14
20
40
1.90
44549--44587
15
2.5
17
80
19
50
35
0
5
58
1.20
45275--45333
22
2.9
20
73
22
52
10
11
1
76
1.10
55199--55249
17
2.9
18
80
8
61
74
0
11
13
1.07
57403--57442
2
20.0
2
100
0
80
50
0
0
50
1.00
58219--58251
14
2.5
14
90
9
52
60
0
0
39
0.97
61358--61386
2
14.5
2
100
0
58
48
0
0
51
1.00
62114--62156
13
3.4
13
78
18
54
67
0
2
30
1.03
62114--62162
25
2.0
24
92
4
80
65
0
2
32
1.04
62982--63029
23
2.1
23
84
0
60
29
0
16
54
1.43
66707--66830
66
1.9
66
89
0
194
16
27
15
40
1.89
68106--68153
3
16.0
3
95
0
87
64
0
2
33
1.05
69395--69425
2
15.5
2
100
0
62
51
0
0
48
1.00
71140--71228
6
14.7
6
77
15
85
34
11
3
50
1.55
71195--71235
18
2.3
18
86
0
55
39
9
2
48
1.49
74539--74605
2
34.5
2
77
16
61
47
4
1
46
1.31
75456--75511
12
5.0
11
72
12
51
33
5
1
58
1.31
76682--76724
21
2.0
22
90
4
70
51
0
0
48
1.00
76684--76731
21
2.2
22
81
7
53
58
0
0
41
0.98
78615--78650
10
3.4
10
92
7
54
2
11
0
86
0.68
78620--78653
12
2.9
12
86
4
52
5
11
0
82
0.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
80244--80308
30
2.2
28
89
5
94
60
0
3
36
1.13
80520--80553
17
1.9
18
88
5
52
67
2
0
29
1.05
80798--80851
20
2.6
21
88
2
74
33
16
9
40
1.80
81574--81616
17
2.5
17
96
0
77
23
23
9
44
1.82
83261--83454
97
2.0
96
84
3
255
27
24
12
35
1.92
83577--83616
21
1.9
21
85
10
55
42
15
15
27
1.86
87914--87949
17
2.1
17
89
0
54
83
0
16
0
0.65
88321--88353
2
16.5
2
93
0
57
45
0
3
51
1.16
88493--88544
24
2.2
25
80
13
65
40
1
5
51
1.37
93927--93977
20
2.5
20
96
0
93
49
15
7
27
1.72
104752--104793
21
2.0
22
90
4
68
19
7
0
73
1.05
105060--105099
18
2.2
18
86
0
53
12
15
0
72
1.12
105671--106754
506
2.2
491
87
6
1497
38
8
4
49
1.53

Tables:   1

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