genome.fa.s919.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold919
Parameters: 2 7 7 80 10 50 1000
Length:  274044

Tables:   1   2   3   

This is table  1  of  3  ( 248 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7418--7456	20	2.0	20	90	5	62	0	17	2	79	0.84
7479--7517	10	4.0	10	83	16	55	0	12	0	87	0.55
7480--7525	12	3.9	12	83	13	60	0	13	0	86	0.56
7479--7528	18	2.7	18	87	9	66	0	16	0	84	0.63
7508--7561	22	2.5	23	76	11	60	0	29	0	70	0.88
7635--7684	25	2.0	26	88	4	75	68	0	0	32	0.90
7624--7695	36	2.0	36	86	10	103	66	0	0	33	0.92
7634--7715	27	3.0	27	79	13	78	62	1	0	36	1.03
8497--8539	22	2.0	22	95	0	77	4	18	0	76	0.95
8536--8592	23	2.5	22	91	5	87	7	21	0	71	1.08
16819--16849	6	5.3	6	96	3	55	83	0	0	16	0.64
16968--16992	2	12.5	2	100	0	50	0	0	48	52	1.00
21109--21377	135	2.0	135	91	0	430	27	27	7	37	1.84
28881--28909	14	2.0	15	93	6	51	37	0	0	62	0.96
30040--30064	3	8.3	3	100	0	50	36	0	0	64	0.94
30532--30585	25	2.2	25	93	6	92	46	1	12	38	1.53
31200--31238	11	3.5	11	85	3	51	66	0	2	30	1.05
31246--31299	19	2.7	20	80	13	58	57	0	1	40	1.09
31380--31446	11	6.2	11	73	15	50	73	2	0	23	0.97
31416--31452	18	2.1	18	90	5	58	75	8	0	16	1.02
31434--31506	29	2.5	29	78	10	69	60	2	0	36	1.11
31878--31913	2	18.0	2	88	0	54	47	2	2	47	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34331--34371	21	2.0	20	85	4	55	41	0	0	58	0.98
37884--37968	43	2.0	43	90	0	134	32	16	20	30	1.94
39285--39320	3	12.7	3	88	11	58	63	0	36	0	0.94
49491--49529	3	13.3	3	94	5	71	30	0	0	69	0.89
51040--51076	2	20.0	2	84	15	53	54	0	0	45	1.00
51040--51076	10	3.5	11	89	10	60	54	0	0	45	1.00
52951--53011	4	14.5	4	83	10	59	29	0	0	70	0.88
53250--53321	25	2.6	28	77	14	78	41	0	0	58	0.98
54036--54069	2	18.0	2	88	11	54	50	0	0	50	1.00
54861--54903	21	2.2	19	87	8	59	48	0	2	48	1.14
55915--55949	16	2.1	18	89	10	56	48	0	11	40	1.39
57201--57703	197	2.5	198	91	2	819	39	8	9	42	1.68
63562--63600	5	8.0	5	88	5	62	79	0	0	20	0.73
64446--64498	18	2.9	18	79	15	56	50	0	0	49	1.00
64452--64497	18	2.6	18	83	16	60	52	0	0	47	1.00
64456--64495	20	2.0	20	85	5	53	52	0	0	47	1.00
65400--65451	20	2.7	18	72	13	50	46	9	0	44	1.36
66812--66860	20	2.5	19	83	3	53	40	4	2	53	1.32
67413--67456	22	2.0	22	82	8	54	45	4	2	47	1.35
67645--67691	19	2.5	19	80	12	53	46	0	0	53	1.00
67680--67721	16	2.6	17	81	11	52	42	0	0	57	0.99
67680--67729	17	3.0	16	85	5	55	44	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67699--67767	24	2.9	24	78	4	77	37	0	0	62	0.96
67730--67767	12	3.2	12	78	14	51	39	0	0	60	0.97
68168--68201	7	4.9	7	92	0	59	23	44	32	0	1.54
68325--68391	8	7.9	8	81	16	57	41	0	0	58	0.98
68327--68381	29	1.9	28	82	10	67	41	0	0	58	0.98
68327--68387	15	4.1	14	73	19	61	40	0	0	59	0.98
68518--68614	32	3.0	30	80	11	95	43	1	0	55	1.06
68911--68939	2	14.5	2	100	0	58	51	0	0	48	1.00
69090--69128	14	2.7	14	88	4	51	41	2	0	56	1.13
69582--69624	21	2.0	21	81	9	50	60	2	4	32	1.30
70808--70864	8	7.6	8	69	15	50	66	0	1	31	1.02
70807--70864	15	3.9	15	76	14	50	65	0	1	32	1.03
71744--71790	23	2.0	23	88	8	69	42	2	0	55	1.12
73969--74001	13	2.5	14	85	14	52	30	0	0	69	0.88
77210--77251	2	21.0	2	95	0	75	50	2	0	47	1.14
78255--78291	3	12.3	3	100	0	74	67	0	0	32	0.91
80527--80578	17	3.2	16	77	20	54	42	0	1	55	1.10
81538--81573	2	18.0	2	88	0	54	44	0	2	52	1.15
83185--83219	13	2.7	13	81	0	52	57	0	0	42	0.99
84410--84444	14	2.5	14	85	0	52	51	0	2	45	1.16
85072--85141	29	2.6	27	80	13	65	32	1	2	62	1.18
85080--85152	28	2.4	31	80	19	82	34	1	4	60	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85514--85545	2	16.0	2	100	0	64	50	0	0	50	1.00
87081--87164	34	2.6	32	72	20	75	54	0	0	45	0.99
87081--87158	22	3.5	23	75	14	67	52	0	0	47	1.00
87881--87927	9	5.3	9	80	10	53	38	0	0	61	0.96
88111--88144	7	4.9	7	92	0	59	52	0	0	47	1.00
88999--89054	3	18.7	3	92	7	96	69	0	0	30	0.89
90376--90408	14	2.4	14	100	0	66	57	0	12	30	1.35
90632--90673	22	1.9	22	100	0	84	45	7	14	33	1.72
93638--93717	39	2.1	38	88	2	115	27	1	6	65	1.25
98393--98428	10	3.6	10	88	11	56	55	0	0	44	0.99
98391--98444	20	2.7	19	77	8	54	55	1	0	42	1.10
98447--98488	20	2.1	20	90	0	66	45	7	0	47	1.30
98691--98742	14	3.6	14	75	14	52	50	0	0	50	1.00
99799--99848	20	2.4	21	80	9	59	52	0	0	48	1.00
99796--99849	21	2.5	23	79	14	69	50	0	0	50	1.00
101624--101680	20	2.8	20	81	2	69	63	0	0	36	0.95
101790--101905	33	3.8	32	71	19	86	46	2	0	50	1.21
101879--101923	17	2.6	18	82	10	58	42	2	0	55	1.12
102667--102733	32	2.1	31	86	2	89	46	1	0	52	1.09
103935--103973	19	2.1	19	90	0	60	51	2	0	46	1.14
103927--103966	20	2.0	20	85	5	53	47	0	0	52	1.00
103942--103996	19	3.0	18	82	10	58	43	1	0	54	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104244--104301	18	3.2	18	81	13	75	68	0	0	31	0.89
104961--105003	19	2.3	18	76	4	50	51	0	0	48	1.00
105886--105932	16	2.8	17	80	9	60	55	8	2	34	1.42
106334--106367	10	3.4	10	87	0	50	41	0	0	58	0.98
106334--106403	21	3.7	20	72	20	60	48	0	0	51	1.00
106348--106407	21	2.6	24	82	15	81	51	0	0	48	1.00
107535--107587	22	2.4	22	77	0	61	49	0	0	50	1.00
108291--108330	20	2.0	20	85	9	55	47	0	0	52	1.00
108349--108428	5	16.8	5	73	19	64	40	0	0	60	0.97
108370--108428	25	2.3	25	85	8	84	35	0	0	64	0.94
108658--108715	18	3.2	18	81	13	75	68	0	0	31	0.89
108658--108731	25	3.0	25	78	4	78	66	0	0	33	0.92
108653--108748	35	2.8	36	80	11	98	66	0	0	33	0.92
108656--108765	38	2.9	38	76	16	95	64	0	0	35	0.94
108732--108810	30	2.8	26	74	23	72	56	1	1	40	1.15
108777--108823	21	2.2	21	84	0	58	59	6	2	31	1.34
108923--108965	12	3.5	13	84	9	54	41	0	0	58	0.98
111714--111752	18	2.1	19	90	4	62	23	2	2	71	1.10
113244--113284	11	4.0	11	81	12	52	73	0	0	26	0.84
113249--113288	21	2.0	20	86	13	57	67	0	0	32	0.91
113978--114016	20	2.0	20	84	0	51	46	10	10	33	1.72
114845--114890	12	3.9	12	82	2	58	0	13	0	86	0.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115048--115105	24	2.5	22	73	10	53	41	3	1	53	1.28
115063--115117	14	3.9	14	78	4	56	36	3	0	60	1.15
115094--115136	20	2.1	21	91	4	70	32	0	0	67	0.91
116850--116890	16	2.6	15	84	7	55	53	0	0	46	1.00
119046--119082	17	2.1	19	90	10	60	59	0	0	40	0.97
119834--119871	2	19.0	2	100	0	76	50	0	0	50	1.00
120016--120073	20	2.9	19	76	16	55	48	0	1	50	1.11
120559--120601	19	2.3	18	80	11	52	55	0	0	44	0.99
120563--120593	15	2.1	15	94	5	55	61	0	0	38	0.96
123058--123086	2	14.5	2	100	0	58	51	0	0	48	1.00

Tables:   1   2   3