genome.fa.s919.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold919
Parameters: 2 7 7 80 10 50 1000
Length:  274044

Tables:   1   2   3   

This is table  2  of  3  ( 248 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125141--125172	2	16.5	2	93	6	57	50	0	0	50	1.00
125599--125636	18	2.0	20	85	10	53	47	13	0	39	1.42
127335--127362	14	2.0	14	100	0	56	57	0	0	42	0.99
127600--127642	17	2.5	18	85	11	63	53	0	18	27	1.45
128275--128305	2	15.5	2	100	0	62	48	0	0	51	1.00
132964--133008	22	2.0	22	86	8	63	40	2	0	57	1.11
135028--135052	2	12.5	2	100	0	50	52	48	0	0	1.00
140804--140895	18	4.8	19	71	14	82	47	0	0	52	1.00
140793--140895	38	2.8	36	85	12	129	49	0	0	50	1.00
141424--141502	41	1.9	41	92	0	131	31	12	8	46	1.73
145791--145862	35	2.0	35	84	10	92	45	1	0	52	1.09
145850--145874	13	1.9	13	100	0	50	32	0	0	68	0.90
146034--146095	21	2.9	23	75	13	62	50	1	0	48	1.10
147966--148024	16	3.6	17	69	15	52	47	3	0	49	1.18
150378--150423	20	2.3	21	74	7	51	69	8	0	21	1.15
150980--151032	23	2.3	22	75	12	52	52	1	1	43	1.23
151306--151361	17	3.2	17	73	12	51	28	3	1	66	1.19
152212--152250	2	19.5	2	100	0	78	48	0	0	51	1.00
152705--152752	24	1.9	26	87	8	73	41	0	0	58	0.98
152979--153020	19	2.1	21	91	8	70	40	0	0	59	0.97
152979--153026	19	2.8	18	81	12	57	35	0	0	64	0.94
153548--153579	16	1.9	17	93	6	57	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
153627--153665	16	2.6	16	88	8	55	51	12	2	33	1.54
153884--153908	8	3.1	8	100	0	50	64	0	0	36	0.94
153870--153918	16	2.8	18	73	17	50	48	0	0	51	1.00
154551--154604	15	3.2	17	79	12	67	46	0	1	51	1.11
155143--155568	111	3.9	111	86	7	560	12	27	24	35	1.91
157087--157127	2	20.5	2	100	0	82	51	0	0	48	1.00
157271--157381	21	5.1	21	72	13	82	47	2	1	47	1.26
157290--157355	13	5.7	12	73	18	50	48	3	1	46	1.26
157302--157341	20	1.9	21	85	10	55	47	2	0	50	1.14
157276--157376	34	3.0	34	92	2	159	46	2	0	49	1.23
157341--157393	21	2.6	21	91	8	83	43	3	0	52	1.19
159182--159238	29	2.0	29	86	6	80	50	3	3	42	1.36
159376--159415	19	2.1	19	90	0	62	47	5	0	47	1.24
159556--159619	29	2.2	29	82	0	83	48	0	1	50	1.10
161728--161764	17	2.2	17	90	4	58	70	2	0	27	1.01
162111--162155	21	2.1	21	87	0	63	20	0	8	71	1.12
162950--162982	13	2.4	14	85	10	50	63	0	0	36	0.95
163015--163050	11	3.5	11	85	14	51	66	0	0	33	0.92
163286--163314	2	14.5	2	100	0	58	48	0	0	51	1.00
163361--163399	12	3.2	12	100	0	78	46	0	0	53	1.00
164604--164788	34	5.5	34	86	3	248	40	25	7	26	1.82
168854--168916	19	3.3	19	90	0	90	34	19	17	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
169222--169404	34	5.4	34	86	3	244	39	26	7	26	1.83
171076--171128	25	2.2	24	86	3	70	56	3	3	35	1.35
171084--171130	22	2.0	24	88	12	71	53	4	4	38	1.40
171084--171132	25	2.0	25	88	7	75	53	4	4	38	1.39
171735--171860	56	2.2	57	90	2	191	36	16	11	35	1.84
173372--173407	18	2.1	18	90	10	58	33	5	0	61	1.19
173363--173424	30	2.1	29	82	11	74	33	3	0	62	1.11
173424--173466	22	2.0	22	86	4	61	44	16	9	30	1.79
173705--173744	18	2.2	18	86	8	55	65	0	2	32	1.06
174356--174386	2	15.0	2	93	6	53	48	0	3	48	1.17
175806--175836	13	2.5	13	94	5	55	16	0	3	80	0.83
175806--175836	6	5.0	6	92	7	53	16	0	3	80	0.83
175898--175943	23	1.9	25	86	8	69	41	0	0	58	0.98
185865--185936	34	2.1	34	87	2	101	22	5	1	70	1.15
186199--186253	27	2.0	27	82	6	67	63	0	0	36	0.95
186245--186338	38	2.5	38	81	15	106	50	1	1	47	1.15
186910--186966	28	2.0	27	80	12	62	47	3	0	49	1.18
188150--188213	28	2.3	27	79	10	67	59	0	0	40	0.97
188146--188210	6	9.6	7	71	22	50	56	0	0	43	0.99
188151--188211	22	2.9	22	74	13	65	57	0	0	42	0.98
188642--188690	24	2.0	24	84	0	62	57	8	2	32	1.40
189161--189190	14	2.1	14	93	0	51	40	0	6	53	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
191634--191658	2	12.5	2	100	0	50	0	48	0	52	1.00
193404--193488	29	2.8	30	77	15	79	51	1	1	45	1.16
194893--194926	2	17.0	2	100	0	68	50	0	0	50	1.00
195987--196064	38	2.1	37	85	2	102	48	8	2	39	1.48
196657--196757	48	2.1	48	81	3	114	40	20	9	28	1.85
196946--196975	16	1.9	15	93	6	51	60	23	0	16	1.36
197376--197467	31	3.1	31	87	7	120	31	2	1	65	1.12
197355--197445	40	2.3	40	90	0	137	31	4	1	62	1.22
197366--197466	12	8.6	12	74	11	66	32	2	0	63	1.16
197397--197458	17	3.6	16	79	14	61	30	1	1	66	1.11
198806--198860	18	2.9	19	79	10	60	54	0	0	45	0.99
198799--198862	19	3.4	18	74	21	60	56	0	0	43	0.99
199927--200003	22	3.5	22	77	17	81	29	1	3	64	1.19
199936--200003	34	2.0	34	88	5	102	29	1	2	66	1.15
199937--200007	22	3.1	24	84	13	89	30	2	2	63	1.23
200392--200462	11	6.5	11	71	20	60	56	9	0	33	1.32
201139--201180	4	10.2	4	94	5	75	71	0	2	26	0.98
201818--201850	16	2.1	16	100	0	66	30	18	12	39	1.87
202399--202433	18	1.9	18	94	0	61	31	14	5	48	1.67
212615--212648	8	3.8	9	88	11	52	79	0	2	17	0.86
212947--213003	23	2.4	24	82	8	73	52	0	0	47	1.00
212947--213006	24	2.5	24	80	15	72	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
214974--215002	2	14.5	2	100	0	58	0	48	0	51	1.00
217016--217091	24	3.2	25	78	10	79	40	1	1	56	1.16
222513--222542	1	30.0	1	93	0	51	0	0	96	3	0.21
223389--223422	1	34.0	1	93	0	59	0	2	0	97	0.19
224712--224860	74	2.0	74	100	0	298	37	16	12	34	1.85
233753--233838	34	2.5	35	81	14	99	51	3	0	45	1.18
236564--236632	20	3.5	19	74	14	59	52	0	0	47	1.00
236605--236655	23	2.3	22	80	6	57	45	0	1	52	1.12
236551--236638	20	4.6	18	71	17	52	51	0	2	46	1.13
236675--236700	3	8.7	3	100	0	52	65	0	0	34	0.93
237120--237241	16	7.8	16	69	21	73	36	1	2	59	1.21
237700--237739	12	3.3	12	92	0	71	35	20	0	45	1.51
237826--237878	19	2.8	19	77	5	63	58	0	1	39	1.09
237840--237923	33	2.5	32	78	16	82	55	3	1	39	1.25
238355--238395	2	20.5	2	100	0	82	48	0	0	51	1.00
238646--238817	21	8.2	20	65	24	63	33	1	2	62	1.18
238678--238728	20	2.5	20	83	6	57	41	5	0	52	1.25
238963--238987	2	12.5	2	100	0	50	52	0	0	48	1.00
239949--240081	32	3.8	33	67	23	83	38	1	5	54	1.32
239899--240061	76	2.1	76	90	2	256	38	2	4	53	1.35
240834--240884	17	3.0	17	75	11	50	31	0	7	60	1.25
244262--244338	38	2.0	41	84	7	106	41	1	2	54	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
245041--245074	15	2.2	16	89	5	52	20	2	2	73	1.09
245319--245357	15	2.6	16	84	8	55	71	0	0	28	0.86
245320--245355	13	2.8	13	87	4	56	75	0	0	25	0.81
245951--245983	16	2.0	17	88	5	50	33	3	3	60	1.27
246512--246564	17	3.4	16	82	7	65	37	0	1	60	1.08
247977--248008	15	2.1	15	100	0	64	43	0	0	56	0.99
253913--254544	315	2.0	315	99	0	1255	39	13	14	32	1.85
259092--259143	18	2.8	19	77	13	56	57	1	1	38	1.21
259287--259372	39	2.1	41	85	12	117	63	1	0	34	1.02
259288--259372	15	6.1	14	71	19	54	63	1	0	35	1.02

Tables:   1   2   3